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Related papers: Does TabPFN Understand Causal Structures?

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Causal discovery from observational data is challenging, especially with large datasets and complex relationships. Traditional methods often struggle with scalability and capturing global structural information. To overcome these…

Machine Learning · Computer Science 2025-07-29 Rezaur Rashid , Gabriel Terejanu

TabPFN has emerged as a promising in-context learning model for tabular data, capable of directly predicting the labels of test samples given labeled training examples. It has demonstrated competitive performance, particularly on…

Machine Learning · Computer Science 2025-02-05 Si-Yang Liu , Han-Jia Ye

Causal discovery, the task of inferring causal structure from data, has the potential to uncover mechanistic insights from biological experiments, especially those involving perturbations. However, causal discovery algorithms over larger…

Machine Learning · Computer Science 2025-04-01 Menghua Wu , Yujia Bao , Regina Barzilay , Tommi Jaakkola

Most tabular-data generators match marginal statistics yet ignore causal structure, leading downstream models to learn spurious or unfair patterns. We present TabSCM, a mixed-type generator that preserves those causal dependencies. Starting…

Machine Learning · Computer Science 2026-04-27 Sven Jacob , Bardh Prenkaj , Weijia Shao , Gjergji Kasneci

Planning effective interventions in biological systems requires treatment-effect models that adapt to unseen biological contexts by identifying their specific underlying mechanisms. Yet single-cell perturbation datasets span only a handful…

Machine Learning · Computer Science 2026-05-08 Marvin Sextro , Weronika Kłos , Gabriel Dernbach

Causal discovery serves a pivotal role in mitigating model uncertainty through recovering the underlying causal mechanisms among variables. In many practical domains, such as healthcare, access to the data gathered by individual entities is…

Machine Learning · Computer Science 2024-02-13 Amin Abyaneh , Nino Scherrer , Patrick Schwab , Stefan Bauer , Bernhard Schölkopf , Arash Mehrjou

Revealing novel insights from the relationship between molecular measurements and pathology remains a very impactful application of machine learning in biomedicine. Data in this domain typically contain only a few observations but thousands…

Machine Learning · Computer Science 2026-03-31 Christopher Kolberg , Jules Kreuer , Jonas Huurdeman , Sofiane Ouaari , Katharina Eggensperger , Nico Pfeifer

Predictive modeling in engineering applications has long been dominated by bespoke models and small, siloed tabular datasets, limiting the applicability of large-scale learning approaches. Despite recent progress in tabular foundation…

Machine Learning · Computer Science 2026-03-06 Lyle Regenwetter , Rosen Yu , Cyril Picard , Faez Ahmed

Tabular classification has traditionally relied on supervised algorithms, which estimate the parameters of a prediction model using its training data. Recently, Prior-Data Fitted Networks (PFNs) such as TabPFN have successfully learned to…

Machine Learning · Computer Science 2023-11-20 Benjamin Feuer , Chinmay Hegde , Niv Cohen

Causal inference from observation data is a core problem in many scientific fields. Here we present a general supervised deep learning framework that infers causal interactions by transforming the input vectors to an image-like…

Machine Learning · Computer Science 2020-11-26 Ye Yuan , Xueying Ding , Ziv Bar-Joseph

Predictive models are being increasingly used across a wide range of domains, including safety-critical applications such as medical diagnosis and criminal justice. Reliable uncertainty estimation is a crucial task in such settings. Tabular…

Machine Learning · Computer Science 2025-09-15 Madhushan Ramalingam

Tabular synthesis models remain ineffective at capturing complex dependencies, and the quality of synthetic data is still insufficient for comprehensive downstream tasks, such as prediction under distribution shifts, automated…

Machine Learning · Computer Science 2024-07-08 Ruibo Tu , Zineb Senane , Lele Cao , Cheng Zhang , Hedvig Kjellström , Gustav Eje Henter

Tabular data, owing to its ubiquitous presence in real-world domains, has garnered significant attention in machine learning research. While tree-based models have long dominated tabular machine learning tasks, the recently proposed deep…

Machine Learning · Computer Science 2025-05-23 Zi-Jian Cheng , Zi-Yi Jia , Zhi Zhou , Yu-Feng Li , Lan-Zhe Guo

Causal discovery algorithms aim at untangling complex causal relationships from data. Here, we study causal discovery and inference methods based on staged tree models, which can represent complex and asymmetric causal relationships between…

Methodology · Statistics 2023-03-02 Manuele Leonelli , Gherardo Varando

Recently, TabPFN has gained attention as a foundation model for tabular data. However, it struggles to integrate heterogeneous modalities such as images and text, which are common in domains like healthcare and marketing, thereby limiting…

Machine Learning · Computer Science 2026-04-10 Wall Kim , Chaeyoung Song , Hanul Kim

While most ML models expect independent and identically distributed data, this assumption is often violated in real-world scenarios due to distribution shifts, resulting in the degradation of machine learning model performance. Until now,…

Machine Learning · Computer Science 2024-11-19 Kai Helli , David Schnurr , Noah Hollmann , Samuel Müller , Frank Hutter

Unsupervised feature learning often finds low-dimensional embeddings that capture the structure of complex data. For tasks for which prior expert topological knowledge is available, incorporating this into the learned representation may…

Machine Learning · Computer Science 2022-03-08 Robin Vandaele , Bo Kang , Jefrey Lijffijt , Tijl De Bie , Yvan Saeys

Real-world problems, for example in climate applications, often require causal reasoning on spatially gridded time series data or data with comparable structure. While the underlying system is often believed to behave similarly at different…

Machine Learning · Computer Science 2026-02-16 Martin Rabel , Jakob Runge

Deep tabular modelling increasingly relies on in-context learning where, during inference, a model receives a set of $(x,y)$ pairs as context and predicts labels for new inputs without weight updates. We challenge the prevailing view that…

Machine Learning · Computer Science 2025-11-14 Junwei Ma , Nour Shaheen , Alex Labach , Amine Mhedhbi , Frank Hutter , Anthony L. Caterini , Valentin Thomas

We derive a set of causal deep neural networks whose architectures are a consequence of tensor (multilinear) factor analysis, a framework that facilitates causal inference. Forward causal questions are addressed with a neural network…

Machine Learning · Computer Science 2025-06-17 M. Alex O. Vasilescu