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As healthcare increasingly turns to AI for scalable and trustworthy clinical decision support, ensuring reliability in model reasoning remains a critical challenge. Individual large language models (LLMs) are susceptible to hallucinations…

Machine Learning · Computer Science 2025-12-05 Huascar Sanchez , Briland Hitaj , Jules Bergmann , Linda Briesemeister

Computer-Aided Drug Discovery research has proven to be a promising direction in drug discovery. In recent years, Deep Learning approaches have been applied to problems in the domain such as Drug-Target Interaction Prediction and have shown…

Machine Learning · Computer Science 2020-04-28 Brighter Agyemang , Wei-Ping Wu , Michael Y. Kpiebaareh , Ebenezer Nanor

Large language models (LLMs) are increasingly integrated into sensitive workflows, raising the stakes for adversarial robustness and safety. This paper introduces Transient Turn Injection(TTI), a new multi-turn attack technique that…

Cryptography and Security · Computer Science 2026-04-24 Naheed Rayhan , Sohely Jahan

MixRx uses Large Language Models (LLMs) to classify drug combination interactions as Additive, Synergistic, or Antagonistic, given a multi-drug patient history. We evaluate the performance of 4 models, GPT-2, Mistral Instruct 2.0, and the…

Other Quantitative Biology · Quantitative Biology 2026-01-08 Risha Surana , Cameron Saidock , Hugo Chacon

Reasoning is essential for large language models (LLMs), especially in complex tasks such as mathematical problem solving. However, multimodal reasoning still faces challenges in modality alignment and training scalability, as many existing…

Computer Vision and Pattern Recognition · Computer Science 2026-05-28 Yahan Yu , Yuyang Dong , Masafumi Oyamada

Automated Machine Learning (AutoML) offers a promising approach to streamline the training of machine learning models. However, existing AutoML frameworks are often limited to unimodal scenarios and require extensive manual configuration.…

Machine Learning · Computer Science 2024-08-02 Daqin Luo , Chengjian Feng , Yuxuan Nong , Yiqing Shen

The drug development process necessitates that pharmacologists undertake various tasks, such as reviewing literature, formulating hypotheses, designing experiments, and interpreting results. Each stage requires accessing and querying vast…

Computation and Language · Computer Science 2023-08-01 Hong Lu , Chuan Li , Yinheng Li , Jie Zhao

Recent advances in Large Multimodal Models (LMM) have made it possible for various applications in human-machine interactions. However, developing LMMs that can comprehend, reason, and plan in complex and diverse 3D environments remains a…

Computer Vision and Pattern Recognition · Computer Science 2023-12-01 Sijin Chen , Xin Chen , Chi Zhang , Mingsheng Li , Gang Yu , Hao Fei , Hongyuan Zhu , Jiayuan Fan , Tao Chen

Long-sequence decision-making, which is usually addressed through reinforcement learning (RL), is a critical component for optimizing strategic operations in dynamic environments, such as real-time bidding in computational advertising. The…

Artificial Intelligence · Computer Science 2026-01-16 Xiaowei Lv , Zhilin Zhang , Yijun Li , Yusen Huo , Siyuan Ju , Xuyan Li , Chunxiang Hong , Tianyu Wang , Yongcai Wang , Peng Sun , Chuan Yu , Jian Xu , Bo Zheng

Purpose: Large language models (LLMs) have proven performance for certain diagnostic tasks, however limited studies have evaluated their consistency in recommending appropriate medication regimens for a given diagnosis. Medication…

Large language models (LLMs) rely on pretraining on massive and heterogeneous corpora, where training data composition has a decisive impact on training efficiency and downstream generalization under realistic compute and data budget…

Computation and Language · Computer Science 2026-04-21 Zhuo Chen , Yuxuan Miao , Supryadi , Deyi Xiong

Automated depression diagnosis aims to analyze multimodal information from interview videos to predict participants' depression scores. Previous studies often lack clear explanations of how these scores were determined, limiting their…

Artificial Intelligence · Computer Science 2026-03-19 Wei Zhang , Juan Chen , En Zhu , Wenhong Cheng , YunPeng Li , Yanbo J. Wang

In healthcare intelligence, the ability to fuse heterogeneous, multi-intent information from diverse clinical sources is fundamental to building reliable decision-making systems. Large Language Model (LLM)-driven information interaction…

Computation and Language · Computer Science 2025-07-04 Dingkang Yang , Jinjie Wei , Mingcheng Li , Jiyao Liu , Lihao Liu , Ming Hu , Junjun He , Yakun Ju , Wei Zhou , Yang Liu , Lihua Zhang

The discovery of drug-target interactions (DTIs) is a pivotal process in pharmaceutical development. Computational approaches are a promising and efficient alternative to tedious and costly wet-lab experiments for predicting novel DTIs from…

Artificial Intelligence · Computer Science 2023-03-22 Bin Liu , Jin Wang , Kaiwei Sun , Grigorios Tsoumakas

Diffusion-based multimodal large language models (Diffusion MLLMs) have recently demonstrated impressive non-autoregressive generative capabilities across vision-and-language tasks. However, Diffusion MLLMs exhibit substantially slower…

Computer Vision and Pattern Recognition · Computer Science 2025-11-18 Shuochen Chang , Xiaofeng Zhang , Qingyang Liu , Li Niu

Previous work on augmenting large multimodal models (LMMs) for text-to-image (T2I) generation has focused on enriching the input space of in-context learning (ICL). This includes providing a few demonstrations and optimizing image…

Computation and Language · Computer Science 2025-01-14 Yongyu Mu , Hengyu Li , Junxin Wang , Xiaoxuan Zhou , Chenglong Wang , Yingfeng Luo , Qiaozhi He , Tong Xiao , Guocheng Chen , Jingbo Zhu

The efficacy of a drug depends on its binding affinity to the therapeutic target and pharmacokinetics. Deep learning (DL) has demonstrated remarkable progress in predicting drug efficacy. We develop MolDesigner, a human-in-the-loop web…

Quantitative Methods · Quantitative Biology 2020-10-09 Kexin Huang , Tianfan Fu , Dawood Khan , Ali Abid , Ali Abdalla , Abubakar Abid , Lucas M. Glass , Marinka Zitnik , Cao Xiao , Jimeng Sun

Large language models (LLMs) exhibit remarkable capabilities across diverse tasks, yet aligning them efficiently and effectively with human expectations remains a critical challenge. This thesis advances LLM alignment by introducing novel…

Computation and Language · Computer Science 2025-06-12 Yuxin Jiang

Drug-drug interactions (DDIs) are a major cause of preventable hospitalizations and deaths. Predicting the occurrence of DDIs helps drug safety professionals allocate investigative resources and take appropriate regulatory action promptly.…

Machine Learning · Computer Science 2018-11-02 Xu Chu , Yang Lin , Jingyue Gao , Jiangtao Wang , Yasha Wang , Leye Wang

We introduce a general stochastic differential equation framework for modelling multiobjective optimization dynamics in iterative Large Language Model (LLM) interactions. Our framework captures the inherent stochasticity of LLM responses…

Machine Learning · Computer Science 2025-10-14 Shivani Shukla , Himanshu Joshi