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Graphs are a powerful tool for representing and analyzing unstructured, non-Euclidean data ubiquitous in the healthcare domain. Two prominent examples are molecule property prediction and brain connectome analysis. Importantly, recent works…

Machine Learning · Computer Science 2022-04-04 Kamilia Mullakaeva , Luca Cosmo , Anees Kazi , Seyed-Ahmad Ahmadi , Nassir Navab , Michael M. Bronstein

Recent advances in experimental neuroscience allow, for the first time, non-invasive studies of the white matter tracts in the human central nervous system, thus making available cutting-edge brain anatomical data describing these global…

Quantitative Methods · Quantitative Biology 2008-11-06 Jonathan J. Crofts , Desmond J. Higham

Network visualization has established as a key complement to network analysis since the large variety of existing network layouts are able to graphically highlight different properties of networks. However, signed networks, i.e., networks…

Social and Information Networks · Computer Science 2019-12-03 Edoardo Galimberti , Chiara Madeddu , Francesco Bonchi , Giancarlo Ruffo

Hovey introduced $A$-cordial labelings as a generalization of cordial and harmonious labelings \cite{Hovey}. If $A$ is an Abelian group, then a labeling $f \colon V (G) \rightarrow A$ of the vertices of some graph $G$ induces an edge…

Combinatorics · Mathematics 2022-01-24 Sylwia Cichacz

Qualitative causal relationships compactly express the direction, dependency, temporal constraints, and monotonicity constraints of discrete or continuous interactions in the world. In everyday or academic language, we may express…

Artificial Intelligence · Computer Science 2022-02-25 Scott Friedman , Ian Magnusson , Vasanth Sarathy , Sonja Schmer-Galunder

Brain connectivity networks, which characterize the functional or structural interaction of brain regions, has been widely used for brain disease classification. Kernel-based method, such as graph kernel (i.e., kernel defined on graphs),…

Machine Learning · Computer Science 2021-01-19 Kai Ma , Biao Jie , Daoqiang Zhang

Researchers continue exploring neurons' intricate patterns of activity in the cerebral visual cortex in response to visual stimuli. The way neurons communicate and optimize their interactions with each other under different experimental…

Neurons and Cognition · Quantitative Biology 2024-02-09 Lauren Miako Beede , Giuseppe Vinci

Graph rigidity theory studies the capability of a graph embedded in the Euclidean space to constrain its global geometric shape via local constraints among nodes and edges, and has been widely exploited in network localization and formation…

Optimization and Control · Mathematics 2025-06-05 Jinpeng Huang , Gangshan Jing

Representation of brain network interactions is fundamental to the translation of neural structure to brain function. As such, methodologies for mapping neural interactions into structural models, i.e., inference of functional connectome…

Neurons and Cognition · Quantitative Biology 2022-03-18 Rahul Biswas , Eli Shlizerman

In this work we focus on examination and comparison of whole-brain functional connectivity patterns measured with fMRI across experimental conditions. Direct examination and comparison of condition-specific matrices is challenging due to…

Applications · Statistics 2013-01-02 Svetlana V. Shinkareva , Vladimir Gudkov , Jing Wang

The frustration index is a key measure for analysing signed networks, which has been underused due to its computational complexity. We use an exact optimisation-based method to analyse frustration as a global structural property of signed…

Social and Information Networks · Computer Science 2019-07-23 Samin Aref , Mark C. Wilson

Analyzing the geometry of correlation sets constrained by general causal structures is of paramount importance for foundational and quantum technology research. Addressing this task is generally challenging, prompting the development of…

A labelled, undirected graph is a graph whose edges have assigned labels, from a specific set. Given a labelled, undirected graph, the well-known minimum labelling spanning tree problem is aimed at finding the spanning tree of the graph…

Discrete Mathematics · Computer Science 2018-07-03 Jose' Andres Moreno Perez , Sergio Consoli

We consider weighted tiling systems to represent functions from graphs to a commutative semiring such as the Natural semiring or the Tropical semiring. The system labels the nodes of a graph by its states, and checks if the neighbourhood of…

Formal Languages and Automata Theory · Computer Science 2020-10-01 C. Aiswarya , Paul Gastin

Label propagation is a powerful and flexible semi-supervised learning technique on graphs. Neural networks, on the other hand, have proven track records in many supervised learning tasks. In this work, we propose a training framework with a…

Machine Learning · Computer Science 2017-03-16 Thang D. Bui , Sujith Ravi , Vivek Ramavajjala

A central question in neuroscience is how self-organizing dynamic interactions in the brain emerge on their relatively static structural backbone. Due to the complexity of spatial and temporal dependencies between different brain areas,…

Neurons and Cognition · Quantitative Biology 2020-10-15 Simon Wein , Wilhelm Malloni , Ana Maria Tomé , Sebastian M. Frank , Gina-Isabelle Henze , Stefan Wüst , Mark W. Greenlee , Elmar W. Lang

This paper studies semi-supervised graph classification, a crucial task with a wide range of applications in social network analysis and bioinformatics. Recent works typically adopt graph neural networks to learn graph-level representations…

Machine Learning · Computer Science 2023-04-25 Wei Ju , Xiao Luo , Meng Qu , Yifan Wang , Chong Chen , Minghua Deng , Xian-Sheng Hua , Ming Zhang

Recent characterisations of self-organising systems depend upon the presence of a Markov blanket: a statistical boundary that mediates the interactions between what is inside of and outside of a system. We leverage this idea to provide an…

Neurons and Cognition · Quantitative Biology 2020-06-05 Ines Hipolito , Maxwell Ramstead , Laura Convertino , Anjali Bhat , Karl Friston , Thomas Parr

In fields ranging from business to systems biology, directed graphs with edges labeled by signs are used to model systems in a simple way: the nodes represent entities of some sort, and an edge indicates that one entity directly affects…

Category Theory · Mathematics 2026-03-20 John C. Baez , Adittya Chaudhuri

Statistical network models are useful for understanding the underlying formation mechanism and characteristics of complex networks. However, statistical models for \textit{signed networks} have been largely unexplored. In signed networks,…

Methodology · Statistics 2023-09-04 Weijing Tang , Ji Zhu
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