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Learning compact and interpretable representations of data is a critical challenge in scientific image analysis. Here, we introduce Affinity-VAE, a generative model that enables us to impose our scientific intuition about the similarity of…

The variational autoencoder (VAE) is a popular, deep, latent-variable model (DLVM) due to its simple yet effective formulation for modeling the data distribution. Moreover, optimizing the VAE objective function is more manageable than other…

Machine Learning · Computer Science 2025-01-28 Surojit Saha , Sarang Joshi , Ross Whitaker

Variational Auto-encoders (VAEs) are deep generative latent variable models consisting of two components: a generative model that captures a data distribution p(x) by transforming a distribution p(z) over latent space, and an inference…

Machine Learning · Computer Science 2022-08-25 Yaniv Yacoby , Weiwei Pan , Finale Doshi-Velez

Variational autoencoders (VAE) encode data into lower-dimensional latent vectors before decoding those vectors back to data. Once trained, decoding a random latent vector from the prior usually does not produce meaningful data, at least…

Machine Learning · Computer Science 2025-07-23 Alejandro Ascarate , Leo Lebrat , Rodrigo Santa Cruz , Clinton Fookes , Olivier Salvado

While unsupervised variational autoencoders (VAE) have become a powerful tool in neuroimage analysis, their application to supervised learning is under-explored. We aim to close this gap by proposing a unified probabilistic model for…

Machine Learning · Computer Science 2019-07-15 Qingyu Zhao , Ehsan Adeli , Nicolas Honnorat , Tuo Leng , Kilian M. Pohl

Variational autoencoders (VAEs) have received much attention recently as an end-to-end architecture for text generation with latent variables. In this paper, we investigate several multi-level structures to learn a VAE model to generate…

Computation and Language · Computer Science 2019-06-21 Dinghan Shen , Asli Celikyilmaz , Yizhe Zhang , Liqun Chen , Xin Wang , Jianfeng Gao , Lawrence Carin

Most visual generative models compress images into a latent space before applying diffusion or autoregressive modelling. Yet, existing approaches such as VAEs and foundation model aligned encoders implicitly constrain the latent space…

Computer Vision and Pattern Recognition · Computer Science 2025-12-09 Sen Ye , Jianning Pei , Mengde Xu , Shuyang Gu , Chunyu Wang , Liwei Wang , Han Hu

We propose a molecular generative model based on the conditional variational autoencoder for de novo molecular design. It is specialized to control multiple molecular properties simultaneously by imposing them on a latent space. As a proof…

Machine Learning · Computer Science 2018-06-18 Jaechang Lim , Seongok Ryu , Jin Woo Kim , Woo Youn Kim

Variational autoencoders (VAEs) are essential tools in end-to-end representation learning. However, the sequential text generation common pitfall with VAEs is that the model tends to ignore latent variables with a strong auto-regressive…

Machine Learning · Computer Science 2021-02-26 Yang Zhao , Ping Yu , Suchismit Mahapatra , Qinliang Su , Changyou Chen

We introduce a Deep Kernel Learning Variational Autoencoder (VAE-DKL) framework that integrates the generative power of a Variational Autoencoder (VAE) with the predictive nature of Deep Kernel Learning (DKL). The VAE learns a latent…

Machine Learning · Computer Science 2025-03-06 Boris N. Slautin , Utkarsh Pratiush , Doru C. Lupascu , Maxim A. Ziatdinov , Sergei V. Kalinin

Deep generative models applied to audio have improved by a large margin the state-of-the-art in many speech and music related tasks. However, as raw waveform modelling remains an inherently difficult task, audio generative models are either…

Machine Learning · Computer Science 2021-12-16 Antoine Caillon , Philippe Esling

In this paper, we present a multimodal and dynamical VAE (MDVAE) applied to unsupervised audio-visual speech representation learning. The latent space is structured to dissociate the latent dynamical factors that are shared between the…

Sound · Computer Science 2024-02-21 Samir Sadok , Simon Leglaive , Laurent Girin , Xavier Alameda-Pineda , Renaud Séguier

Molecular dynamics is crucial for understanding molecular systems but its applicability is often limited by the vast timescales of rare events like protein folding. Enhanced sampling techniques overcome this by accelerating the simulation…

Machine Learning · Computer Science 2026-02-24 Seonghyun Park , Kiyoung Seong , Soojung Yang , Rafael Gómez-Bombarelli , Sungsoo Ahn

This paper proposes a new model, called condition-transforming variational autoencoder (CTVAE), to improve the performance of conversation response generation using conditional variational autoencoders (CVAEs). In conventional CVAEs , the…

Computation and Language · Computer Science 2019-04-25 Yu-Ping Ruan , Zhen-Hua Ling , Quan Liu , Zhigang Chen , Nitin Indurkhya

Deep generative models with discrete latent space, such as the Vector-Quantized Variational Autoencoder (VQ-VAE), offer excellent data generation capabilities, but, due to the large size of their latent space, their probabilistic inference…

Machine Learning · Computer Science 2025-09-03 Armin Hadžić , Milan Papez , Tomáš Pevný

The task of causal representation learning aims to uncover latent higher-level causal variables that affect lower-level observations. Identifying the true latent causal variables from observed data, while allowing instantaneous causal…

Machine Learning · Computer Science 2026-02-19 Yuhang Liu , Zhen Zhang , Dong Gong , Mingming Gong , Biwei Huang , Anton van den Hengel , Kun Zhang , Javen Qinfeng Shi

Syntactic information contains structures and rules about how text sentences are arranged. Incorporating syntax into text modeling methods can potentially benefit both representation learning and generation. Variational autoencoders (VAEs)…

Computation and Language · Computer Science 2019-08-28 Yijun Xiao , William Yang Wang

Understanding and controlling latent representations in deep generative models is a challenging yet important problem for analyzing, transforming and generating various types of data. In speech processing, inspiring from the anatomical…

Sound · Computer Science 2023-03-22 Samir Sadok , Simon Leglaive , Laurent Girin , Xavier Alameda-Pineda , Renaud Séguier

Fair and unbiased machine learning is an important and active field of research, as decision processes are increasingly driven by models that learn from data. Unfortunately, any biases present in the data may be learned by the model,…

Machine Learning · Computer Science 2020-02-27 Matthew J. Vowels , Necati Cihan Camgoz , Richard Bowden

A data-driven framework is proposed towards the end of predictive modeling of complex spatio-temporal dynamics, leveraging nested non-linear manifolds. Three levels of neural networks are used, with the goal of predicting the future state…

Computational Physics · Physics 2020-09-14 Jiayang Xu , Karthik Duraisamy
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