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Insomnia often requires pharmacological interventions, with benzodiazepines and Z-drugs enhancing GABA's inhibitory effects by stabilizing GABAA receptor chloride ion channels. Prolonged use, however, raises dependency and cognitive…

Quantitative Methods · Quantitative Biology 2024-02-09 Ali Y. Benkherouf

The so-called gut-brain axis has stimulated extensive research on microbiomes. One focus is to assess the association between certain clinical outcomes and the relative abundances of gut microbes, which can be presented as sub-compositional…

Methodology · Statistics 2020-06-02 Xiaokang Liu , Xiaomei Cong , Gen Li , Kendra Maas , Kun Chen

There has been a growing acknowledgement of the involvement of the gut microbiome - the collection of microbes that reside in our gut - in regulating our mood and behaviour. This phenomenon is referred to as the microbiome-gut-brain axis.…

Genomics · Quantitative Biology 2023-12-11 Thomaz F. S. Bastiaanssen , Thomas P. Quinn , Amy Loughman

Metabolism plays a crucial role in sleep regulation, yet its effects are challenging to track in real time. This study introduces a machine learning-based framework to analyze sleep patterns and identify how metabolic changes influence…

Quantitative Methods · Quantitative Biology 2025-03-18 Hao Huang , Kaijing Xu , Michael Lardelli

Weight gain is a well-established side effect of both conventional and newer anti-psychotic drugs, but the cause is not well understood. Recent studies correlate obesity with the presence or absence of particular genetic sequences in the…

Genomics · Quantitative Biology 2014-01-13 Harshad Joshi , Ankita Parihar , Dazhi Jiao , Shwetha Murali , David J. Wild

The gut microbiome plays a crucial role in human health, yet the mechanisms underlying host-microbiome interactions remain unclear, limiting its translational potential. Recent microbiome multiomics studies, particularly paired…

Methodology · Statistics 2025-04-09 Haoran Shi , Yue Wang , Dan Cheng

The intestinal microbiota plays important roles in digestion and resistance against entero-pathogens. As with other ecosystems, its species composition is resilient against small disturbances but strong perturbations such as antibiotics can…

Quantitative Methods · Quantitative Biology 2015-06-04 Vanni Bucci , Serena Bradde , Giulio Biroli , Joao B. Xavier

Rheumatoid arthritis (RA) is a chronic, disabling and incurable autoimmune disease. It has been widely recognized that gut microbial dysbiosis is an important contributor to the pathogenesis of RA, although distinct alterations in…

Noise has both auditory and extra-auditory effects. Some of the most deleterious extra-auditory effects of noise are those leading to sleep disturbances. These disturbances seem to be related to both endogenous (physical parameters) and…

Neurons and Cognition · Quantitative Biology 2008-12-18 Arnaud Rabat

Due to the aging of the world population and westernization of lifestyles, the prevalence of neurodegenerative diseases such as Alzheimer's disease (AD) and Parkinson's disease (PD) is rapidly rising and is expected to put a strong…

Background: Adolescence is a critical period of brain maturation and heightened vulnerability to cognitive and mental health disorders. Sleep plays a vital role in neurodevelopment, yet the mechanisms linking insufficient sleep to adverse…

Populations and Evolution · Quantitative Biology 2025-12-10 Xinglin Zeng , Yiran Li , Fan Nils Yang , Gianpaolo Del Mauro , Jiaao Yu , Ruoxi Lu , Jiachen Zhuo , Laura Rowland , Wickwire Emerson , Ze Wang

The emerging field of immunometabolism has underscored the central role of metabolic pathways in orchestrating immune cell function. Far from being passive background processes, metabolic activities actively regulate key immune responses.…

Cell Behavior · Quantitative Biology 2025-06-04 Sunayana Malla , Nabia Shahreen , Rajib Saha

Alterations in the human gut bacteriome can be associated with human health issues, such as type-2 diabetes and cardiovascular disease. Both external and internal factors can drive changes in the composition and in the interactions of the…

Molecular Networks · Quantitative Biology 2021-07-19 Samitha Somathilaka , Daniel P. Martins , Wiley Barton , Orla O'Sullivan , Paul D. Cotter , Sasitharan Balasubramaniam

The intricate interplay between host organisms and their gut microbiota has catalyzed research into the microbiome's role in disease, shedding light on novel aspects of disease pathogenesis. However, the mechanisms through which the…

Methodology · Statistics 2024-02-20 Lei Fang , Yue Wang , Chenglong Ye

Alzheimer's disease (AD), a debilitating neurodegenerative disorder, remains one of the foremost public health challenges of our time. Despite decades of research, its etiology largely remains enigmatic. Recently, attention has turned to…

A system-level framework of complex microbe-microbe and host-microbe chemical cross-talk would help elucidate the role of our gut microbiota in health and disease. Here we report a literature-curated interspecies network of the human gut…

Molecular Networks · Quantitative Biology 2017-06-07 Jaeyun Sung , Seunghyeon Kim , Josephine Jill T. Cabatbat , Sungho Jang , Yong-Su Jin , Gyoo Yeol Jung , Nicholas Chia , Pan-Jun Kim

Due to their antimicrobial properties, silver nanoparticles (AgNPs) are being used in non-edible and edible consumer products. It is not clear though if exposure to these chemicals can exert toxic effects on the host and gut microbiome.…

Molecular communication (MC) provides a quantitative framework for analyzing information transfer within biological systems. This paper introduces a novel and comprehensive MC framework for the gut-brain axis (GBA) as a system of six…

Emerging Technologies · Computer Science 2025-09-16 Beyza E. Ortlek , Ozgur B. Akan

The gut-brain axis has emerged as a key player in the regulation of brain function and cognitive health. Gut microbiota dysbiosis has been observed in preclinical models of Alzheimer's disease and patients. Manipulating the composition of…

In many social mammals, early life social adversity and social integration largely predict individual health, lifespan and reproductive success. Efforts in identifying the physiological mechanisms mediating the relationship between the…

Populations and Evolution · Quantitative Biology 2022-01-25 Alice Baniel , Marie J. E. Charpentier
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