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Segmentation of bone regions allows for enhanced diagnostics, disease characterisation and treatment monitoring in CT imaging. In contrast enhanced whole-body scans accurate automatic segmentation is particularly difficult as low dose whole…
Segmentation is a critical task in computational pathology, as it identifies areas affected by disease or abnormal growth and is essential for diagnosis and treatment. However, acquiring high-quality pixel-level supervised segmentation data…
Segmenting skin lesions images is relevant both for itself and for assisting in lesion classification, but suffers from the challenge in obtaining annotated data. In this work, we show that segmentation may improve with less data, by…
Image segmentation is a fundamental task in the field of imaging and vision. Supervised deep learning for segmentation has achieved unparalleled success when sufficient training data with annotated labels are available. However, annotation…
The recently proposed Segment Anything Model (SAM) is a general tool for image segmentation, but it requires additional adaptation and careful fine-tuning for medical image segmentation, especially for small, irregularly-shaped, and…
Self-supervised learning (SSL) has emerged as a central paradigm for training foundation models by leveraging large-scale unlabeled datasets, often producing representations with strong generalization capabilities. These models are…
High-quality labeled data is essential to successfully train supervised machine learning models. Although a large amount of unlabeled data is present in the medical domain, labeling poses a major challenge: medical professionals who can…
Scene coordinate regression (SCR) methods have emerged as a promising area of research due to their potential for accurate visual localization. However, many existing SCR approaches train on samples from all image regions, including dynamic…
Finding the eye and parsing out the parts (e.g. pupil and iris) is a key prerequisite for image-based eye tracking, which has become an indispensable module in today's head-mounted VR/AR devices. However, a typical route for training a…
Visual grounding localizes regions (boxes or segments) in the image corresponding to given referring expressions. In this work we address image segmentation from referring expressions, a problem that has so far only been addressed in a…
Accurate segmentation of organelle instances from electron microscopy (EM) images plays an essential role in many neuroscience researches. However, practical scenarios usually suffer from high annotation costs, label scarcity, and large…
Semantic segmentation aims to classify every pixel of an input image. Considering the difficulty of acquiring dense labels, researchers have recently been resorting to weak labels to alleviate the annotation burden of segmentation. However,…
This paper proposes a novel weakly-supervised semantic segmentation method using image-level label only. The class-specific activation maps from the well-trained classifiers are used as cues to train a segmentation network. The well-known…
Visual Foundation Models (VFMs) such as the Segment Anything Model (SAM) have significantly advanced broad use of image segmentation. However, SAM and its variants necessitate substantial manual effort for prompt generation and additional…
Multi-atlas segmentation (MAS) is a popular image segmentation technique for medical images. In this work, we improve the performance of MAS by correcting registration errors before label fusion. Specifically, we use a volumetric…
In this paper we propose a novel deep learning-based algorithm for biomedical image segmentation which uses a sequential attention mechanism able to shift the focus of attention across the image in a selective way, allowing subareas which…
Surgical tool segmentation in endoscopic images is an important problem: it is a crucial step towards full instrument pose estimation and it is used for integration of pre- and intra-operative images into the endoscopic view. While many…
As bone and air produce weak signals with conventional MR sequences, segmentation of these tissues particularly difficult in MRI. We propose to integrate patch-based anatomical signatures and an auto-context model into a machine learning…
Statistical Shape Models (SSMs) excel at identifying population level anatomical variations, which is at the core of various clinical and biomedical applications, including morphology-based diagnostics and surgical planning. However, the…
Medical image segmentation is one of the major challenges addressed by machine learning methods. Yet, deep learning methods profoundly depend on a large amount of annotated data, which is time-consuming and costly. Though, semi-supervised…