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Scientific Workflow Systems such as Galaxy and Nextflow are essential for scalable, reproducible, and automated bioinformatics analyses. However, developing and understanding scientific workflows remains challenging for many domain…

Software Engineering · Computer Science 2025-08-18 Khairul Alam , Banani Roy

Scientific paper retrieval is essential for supporting literature discovery and research. While dense retrieval methods demonstrate effectiveness in general-purpose tasks, they often fail to capture fine-grained scientific concepts that are…

Information Retrieval · Computer Science 2025-10-07 Yunyi Zhang , Ruozhen Yang , Siqi Jiao , SeongKu Kang , Jiawei Han

Scientific literature question answering is a pivotal step towards new scientific discoveries. Recently, \textit{two-stage} retrieval-augmented generated large language models (RAG-LLMs) have shown impressive advancements in this domain.…

Computation and Language · Computer Science 2025-09-25 Haotian Chen , Qingqing Long , Meng Xiao , Xiao Luo , Wei Ju , Chengrui Wang , Xuezhi Wang , Yuanchun Zhou , Hengshu Zhu

This paper introduces AnalyticsGPT, an intuitive and efficient large language model (LLM)-powered workflow for scientometric question answering. This underrepresented downstream task addresses the subcategory of meta-scientific questions…

Computation and Language · Computer Science 2026-02-11 Khang Ly , Georgios Cheirmpos , Adrian Raudaschl , Christopher James , Seyed Amin Tabatabaei

Large language models (LLMs) are incredible and versatile tools for text-based tasks that have enabled countless, previously unimaginable, applications. Retrieval models, in contrast, have not yet seen such capable general-purpose models…

Information Retrieval · Computer Science 2025-09-10 Julian Killingback , Hamed Zamani

Large language models (LLMs) have shown potential in assisting scientific research, yet their ability to discover high-quality research hypotheses remains unexamined due to the lack of a dedicated benchmark. To address this gap, we…

Computation and Language · Computer Science 2026-04-21 Yujie Liu , Zonglin Yang , Tong Xie , Jinjie Ni , Ben Gao , Yuqiang Li , Shixiang Tang , Wanli Ouyang , Erik Cambria , Dongzhan Zhou

In this thesis first we propose an intermediate data management scheme for a SWfMS. In our second attempt, we explored the possibilities and introduced an automatic recommendation technique for a SWfMS from real-world workflow data (i.e…

Information Retrieval · Computer Science 2020-10-28 Debasish Chakroborti

Deep research agents have emerged as powerful systems for addressing complex queries. Meanwhile, LLM-based retrievers have demonstrated strong capability in following instructions or reasoning. This raises a critical question: can LLM-based…

Information Retrieval · Computer Science 2026-02-09 Tiansheng Hu , Yilun Zhao , Canyu Zhang , Arman Cohan , Chen Zhao

In an Information Retrieval (IR) system, reranking plays a critical role by sorting candidate passages according to their relevance to a specific query. This process demands a nuanced understanding of the variations among passages linked to…

Information Retrieval · Computer Science 2026-04-20 Can Jin , Hongwu Peng , Anxiang Zhang , Nuo Chen , Jiahui Zhao , Xi Xie , Kuangzheng Li , Shuya Feng , Kai Zhong , Caiwen Ding , Dimitris N. Metaxas

Large language models (LLMs) have gained significant attention in various fields but prone to hallucination, especially in knowledge-intensive (KI) tasks. To address this, retrieval-augmented generation (RAG) has emerged as a popular…

Computation and Language · Computer Science 2024-04-23 Xiaoxi Li , Zhicheng Dou , Yujia Zhou , Fangchao Liu

Utilizing large language models (LLMs) for document reranking has been a popular and promising research direction in recent years, many studies are dedicated to improving the performance and efficiency of using LLMs for reranking. Besides,…

Information Retrieval · Computer Science 2025-04-11 Qi Liu , Haozhe Duan , Yiqun Chen , Quanfeng Lu , Weiwei Sun , Jiaxin Mao

Large language models (LLMs) typically enhance their performance through either the retrieval of semantically similar information or the improvement of their reasoning capabilities. However, a significant challenge remains in effectively…

Artificial Intelligence · Computer Science 2026-01-05 Shuqi Liu , Bowei He , Chen Ma , Linqi Song

Scientific workflow systems are increasingly popular for expressing and executing complex data analysis pipelines over large datasets, as they offer reproducibility, dependability, and scalability of analyses by automatic parallelization on…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-07-09 Mario Sänger , Ninon De Mecquenem , Katarzyna Ewa Lewińska , Vasilis Bountris , Fabian Lehmann , Ulf Leser , Thomas Kosch

Pre-trained language models (PLMs) have proven to be effective for document re-ranking task. However, they lack the ability to fully interpret the semantics of biomedical and health-care queries and often rely on simplistic patterns for…

Computation and Language · Computer Science 2023-05-09 Deepak Gupta , Dina Demner-Fushman

In today's fast-evolving business landscape, having insight into the technology stacks that organizations use is crucial for forging partnerships, uncovering market openings, and informing strategic choices. However, conventional technology…

Information Retrieval · Computer Science 2025-01-28 Minh Hieu Nguyen , Hien Thu Pham , Hiep Minh Ha , Ngoc Quang Hung Le , Jun Jo

The application of large language models (LLMs) to healthcare information extraction has emerged as a promising approach. This study evaluates the classification performance of five open-source LLMs: GEMMA-3-27B-IT, LLAMA3-70B, LLAMA4-109B,…

Computation and Language · Computer Science 2025-05-09 Yuting Guo , Abeed Sarker

Information retrieval is a rapidly evolving field of information retrieval, which is characterized by a continuous refinement of techniques and technologies, from basic hyperlink-based navigation to sophisticated algorithm-driven search…

Information Retrieval · Computer Science 2024-02-09 Dipankar Sarkar

Head Start programs utilizing GoEngage face significant challenges when new or rotating staff attempt to locate appropriate Tasks (modules) on the platform homepage. These difficulties arise from domain-specific jargon (e.g., IFPA, DRDP),…

Computation and Language · Computer Science 2025-10-08 Bowen Wei

Frontier large language models (LLMs), such as GPT-5, Claude 4.5, Gemini 3, Llama 4, and DeepSeek-R1, represent a transformative class of AI tools capable of revolutionizing various aspects of healthcare by generating human-like responses…

Scientific retrieval is essential for advancing scientific knowledge discovery. Within this process, document reranking plays a critical role in refining first-stage retrieval results. However, standard LLM listwise reranking faces…

Information Retrieval · Computer Science 2025-08-19 Runchu Tian , Xueqiang Xu , Bowen Jin , SeongKu Kang , Jiawei Han
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