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Recent years showed a strong increase in biomedical sciences and an inherent increase in publication volume. Extraction of specific information from these sources requires highly sophisticated text mining and information extraction tools.…

Computation and Language · Computer Science 2020-04-09 Johannes Kirschnick , Philippe Thomas , Roland Roller , Leonhard Hennig

Deep learning has enabled great strides in abdominal multi-organ segmentation, even surpassing junior oncologists on common cases or organs. However, robustness on corner cases and complex organs remains a challenging open problem for…

Image and Video Processing · Electrical Eng. & Systems 2024-06-21 Xiangde Luo , Zihan Li , Shaoting Zhang , Wenjun Liao , Guotai Wang

We introduce SoFiA, a flexible software application for the detection and parameterization of sources in 3D spectral-line datasets. SoFiA combines for the first time in a single piece of software a set of new source-finding and…

Digital pathology has become a standard in the pathology workflow due to its many benefits. These include the level of detail of the whole slide images generated and the potential immediate sharing of cases between hospitals. Recent…

Human-Computer Interaction · Computer Science 2023-07-18 Cristian Camilo Pulgarín-Ospina , Rocío del Amor , Adrián Colomera , Julio Silva-Rodríguez , Valery Naranjo

This paper introduces the TAI Scan Tool, a RAG-based TAI self-assessment tool with minimalistic input. The current version of the tool supports the legal TAI assessment, with a particular emphasis on facilitating compliance with the AI Act.…

Artificial Intelligence · Computer Science 2025-09-18 Athanasios Davvetas , Xenia Ziouvelou , Ypatia Dami , Alexios Kaponis , Konstantina Giouvanopoulou , Michael Papademas

The integration of artificial intelligence (AI) into medicine is remarkable, offering advanced diagnostic and therapeutic possibilities. However, the inherent opacity of complex AI models presents significant challenges to their clinical…

Computer Vision and Pattern Recognition · Computer Science 2025-09-23 Binbin Wen , Yihang Wu , Tareef Daqqaq , Ahmad Chaddad

Ultrasound-based elasticity imaging is a non-invasive technique for estimating tissue stiffness fields from displacement fields obtained by comparing ultrasound signals before and after compression. While recent deep learning approaches…

Medical Physics · Physics 2026-01-22 Heekyu Kim , Hugon LEe , Minwoo Park , Seunghwa Ryu

Quantitative organ assessment is an essential step in automated abdominal disease diagnosis and treatment planning. Artificial intelligence (AI) has shown great potential to automatize this process. However, most existing AI algorithms rely…

Ultrasound images vary widely across scanners, operators, and anatomical targets, which often causes models trained in one setting to generalize poorly to new hospitals and clinical conditions. The Foundation Model Challenge for Ultrasound…

Computer Vision and Pattern Recognition · Computer Science 2026-03-23 Ufaq Khan , L. D. M. S. Sai Teja , Ayuba Shakiru , Mai A. Shaaban , Yutong Xie , Muhammad Bilal , Muhammad Haris Khan

Describing the processes involved in analyzing data from electrophysiology experiments to investigate the function of neural systems is inherently challenging. On the one hand, data can be analyzed by distinct methods that serve a similar…

Quantitative Methods · Quantitative Biology 2024-12-09 Cristiano André Köhler , Sonja Grün , Michael Denker

In the context of collaborative AI research and development projects, it would be ideal to have self-contained encapsulated algorithms that can be easily shared between different parties, executed and validated on data at different sites,…

Software Engineering · Computer Science 2025-09-12 Hans Meine , Yongli Mou , Guido Prause , Horst Hahn

Acousto-optic imaging (AOI) enables optical-contrast imaging deep inside scattering samples via localized ultrasound-modulation of scattered light. While AOI allows optical investigations at depths, its imaging resolution is inherently…

Optics · Physics 2021-01-26 Moriya Rosenfeld , Daniel Doktofsky , Gil Weinberg , Yunzhe Li , Lei Tian , Ori Katz

Purpose: Optimization challenges in science, engineering, and real-world applications often involve complex, high-dimensional, and multimodal search spaces. Traditional optimization methods frequently struggle with local optima entrapment,…

Neural and Evolutionary Computing · Computer Science 2025-11-04 Sreeja Singh , Tamal Ghosh

Image based biomarker discovery typically requires an accurate segmentation of histologic structures (e.g., cell nuclei, tubules, epithelial regions) in digital pathology Whole Slide Images (WSI). Unfortunately, annotating each structure of…

Image and Video Processing · Electrical Eng. & Systems 2021-01-07 Runtian Miao , Robert Toth , Yu Zhou , Anant Madabhushi , Andrew Janowczyk

Precise delineation of multiple organs or abnormal regions in the human body from medical images plays an essential role in computer-aided diagnosis, surgical simulation, image-guided interventions, and especially in radiotherapy treatment…

Image and Video Processing · Electrical Eng. & Systems 2024-11-19 Shiman Li , Haoran Wang , Yucong Meng , Chenxi Zhang , Zhijian Song

Explainable artificial intelligence (XAI) has become increasingly important in biomedical image analysis to promote transparency, trust, and clinical adoption of DL models. While several surveys have reviewed XAI techniques, they often lack…

Computer Vision and Pattern Recognition · Computer Science 2025-07-11 Getamesay Haile Dagnaw , Yanming Zhu , Muhammad Hassan Maqsood , Wencheng Yang , Xingshuai Dong , Xuefei Yin , Alan Wee-Chung Liew

Recent research has demonstrated that artificial intelligence (AI) can assist electronic design automation (EDA) in improving both the quality and efficiency of chip design. But current AI for EDA (AI-EDA) infrastructures remain fragmented,…

Machine Learning · Computer Science 2025-11-11 Yihang Qiu , Zengrong Huang , Simin Tao , Hongda Zhang , Weiguo Li , Xinhua Lai , Rui Wang , Weiqiang Wang , Xingquan Li

Finding a realistic deformation that transforms one image into another, in case large deformations are required, is considered a key challenge in medical image analysis. Having a proper image registration approach to achieve this could…

Computer Vision and Pattern Recognition · Computer Science 2023-03-10 Georgios Andreadis , Peter A. N. Bosman , Tanja Alderliesten

We introduce a new class of iterative image reconstruction algorithms for radio interferometry, at the interface of convex optimization and deep learning, inspired by plug-and-play methods. The approach consists in learning a prior image…

Image and Video Processing · Electrical Eng. & Systems 2022-09-28 Matthieu Terris , Arwa Dabbech , Chao Tang , Yves Wiaux

We present RASO, a foundation model designed to Recognize Any Surgical Object, offering robust open-set recognition capabilities across a broad range of surgical procedures and object classes, in both surgical images and videos. RASO…

Computer Vision and Pattern Recognition · Computer Science 2025-05-07 Jiajie Li , Brian R Quaranto , Chenhui Xu , Ishan Mishra , Ruiyang Qin , Dancheng Liu , Peter C W Kim , Jinjun Xiong
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