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Developing generalizable AI for medical imaging requires both access to large, multi-center datasets and standardized, reproducible tooling within research environments. However, leveraging real-world imaging data in clinical research…

Computer Vision and Pattern Recognition · Computer Science 2025-12-11 Ünal Akünal , Markus Bujotzek , Stefan Denner , Benjamin Hamm , Klaus Kades , Philipp Schader , Jonas Scherer , Marco Nolden , Peter Neher , Ralf Floca , Klaus Maier-Hein

The aim of this paper is to give an overview of brain organoid computing, its characteristics, challenges, as well as possible advantages for future applications in the field of artificial intelligence. An important part is the extensive…

Emerging Technologies · Computer Science 2025-11-04 Yannic Talavera , Bernd Ulmann

The recent developments in soft computing cannot be complete without noting the contributions of artificial neural machine learning systems that draw inspiration from real cortical tissue or processes that occur in human brain. The…

Neural and Evolutionary Computing · Computer Science 2024-01-08 Emmanuel Ndidi Osegi

Digital pathology has emerged as a transformative approach to tissue analysis, offering unprecedented opportunities for objective, quantitative assessment of histopathological features. However, the complexity of implementing artificial…

Quantitative Methods · Quantitative Biology 2025-09-17 Noor Shaker , Mohamed AbouZleikha , Nuha Shaker

Noninvasive optical imaging modalities can probe patient's tissue in 3D and over time generate gigabytes of clinically relevant data per sample. There is a need for AI models to analyze this data and assist clinical workflow. The lack of…

The advancement of artificial intelligence (AI) in food and nutrition research is hindered by a critical bottleneck: the lack of annotated food data. Despite the rise of highly efficient AI models designed for tasks such as food…

Computer Vision and Pattern Recognition · Computer Science 2024-11-12 Lubnaa Abdur Rahman , Ioannis Papathanail , Lorenzo Brigato , Stavroula Mougiakakou

Studying the growth and metabolism of microbes provides critical insights into their evolutionary adaptations to harsh environments, which are essential for microbial research and biotechnology applications. In this study, we developed an…

Image and Video Processing · Electrical Eng. & Systems 2025-05-06 Shuang Zhang , Carleton Coffin , Karyn L. Rogers , Catherine Ann Royer , Ge Wang

This research presents an advanced AI-powered ultrasound imaging system that incorporates real-time image processing, organ tracking, and voice commands to enhance the efficiency and accuracy of diagnoses in clinical practice. Traditional…

Image and Video Processing · Electrical Eng. & Systems 2024-11-21 Emad Mohamed , Shruti Tiwari , Sheena Christabel Pravin

Automatic optical inspection (AOI) plays a pivotal role in the manufacturing process, predominantly leveraging high-resolution imaging instruments for scanning purposes. It detects anomalies by analyzing image textures or patterns, making…

Computer Vision and Pattern Recognition · Computer Science 2024-03-19 Chih-Chung Hsu , Chia-Ming Lee , Chun-Hung Sun , Kuang-Ming Wu

Earth observation (EO) in open-world settings presents a unique challenge: different applications rely on diverse sensor modalities, each with varying ground sampling distances, spectral ranges, and numbers of spectral bands. However,…

Computer Vision and Pattern Recognition · Computer Science 2025-10-17 Zhitong Xiong , Yi Wang , Fahong Zhang , Adam J. Stewart , Joëlle Hanna , Damian Borth , Ioannis Papoutsis , Bertrand Le Saux , Gustau Camps-Valls , Xiao Xiang Zhu

The relation between a structure and the function running on that structure is of central interest in many fields, including computer science, biology (organ vs. function), psychology (body vs. mind), architecture (designs vs.…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-01-16 Ciprian Ionut Paduraru , Gheorghe Stefanescu

The complexity of human biology and its intricate systems holds immense potential for advancing human health, disease treatment, and scientific discovery. However, traditional manual methods for studying biological interactions are often…

Other Quantitative Biology · Quantitative Biology 2025-01-24 Himanshu Buckchash , Gyanendra Kumar Verma , Dilip K. Prasad

Ontology Alignment (OA) is fundamental for achieving semantic interoperability across diverse knowledge systems. We present OntoAligner, a comprehensive, modular, and robust Python toolkit for ontology alignment, designed to address current…

Artificial Intelligence · Computer Science 2025-03-31 Hamed Babaei Giglou , Jennifer D'Souza , Oliver Karras , Sören Auer

We present an approach of using AI to model and simulate biology and life. Why is it important? Because at the core of medicine, pharmacy, public health, longevity, agriculture and food security, environmental protection, and clean energy,…

Artificial Intelligence · Computer Science 2024-12-11 Le Song , Eran Segal , Eric Xing

In recent years microbiome studies have become increasingly prevalent and large-scale. Through high-throughput sequencing technologies and well-established analytical pipelines, relative abundance data of operational taxonomic units and…

Methodology · Statistics 2022-05-12 Yan Li , Gen Li , Kun Chen

With the fast-growing and evolving omics data, the demand for streamlined and adaptable tools to handle the analysis continues to grow. In response to this need, we introduce Auto Bioinformatics Analysis (AutoBA), an autonomous AI agent…

Genomics · Quantitative Biology 2023-09-08 Juexiao Zhou , Bin Zhang , Xiuying Chen , Haoyang Li , Xiaopeng Xu , Siyuan Chen , Xin Gao

Optics is foundational to research in many areas of science and engineering, including nanophotonics, quantum information, materials science, biomedical imaging, and metrology. However, the design, assembly, and alignment of optical…

AI systems, in particular with deep learning techniques, have demonstrated superior performance for various real-world applications. Given the need for tailored optimization in specific scenarios, as well as the concerns related to the…

Artificial Intelligence · Computer Science 2024-11-12 Zhiyu Zhu , Zhibo Jin , Hongsheng Hu , Minhui Xue , Ruoxi Sun , Seyit Camtepe , Praveen Gauravaram , Huaming Chen

Conventional vocoders are commonly used as analysis tools to provide interpretable features for downstream tasks such as speech synthesis and voice conversion. They are built under certain assumptions about the signals following signal…

Audio and Speech Processing · Electrical Eng. & Systems 2021-10-14 Sergey Nikonorov , Berrak Sisman , Mingyang Zhang , Haizhou Li

We present the Novel-Materials-Discovery (NOMAD) Artificial-Intelligence (AI) Toolkit, a web-browser-based infrastructure for the interactive AI-based analysis of materials-science findable, accessible, interoperable, and reusable (FAIR)…

Materials Science · Physics 2022-11-10 Luigi Sbailò , Ádám Fekete , Luca M. Ghiringhelli , Matthias Scheffler