Related papers: Sequence Reconstruction over the Deletion Channel
Mean-based reconstruction is a fundamental, natural approach to worst-case trace reconstruction over channels with synchronization errors. It is known that $\exp(O(n^{1/3}))$ traces are necessary and sufficient for mean-based worst-case…
We consider the problem of block-coded communication, where in each block, the channel law belongs to one of two disjoint sets. The decoder is aimed to decode only messages that have undergone a channel from one of the sets, and thus has to…
We examine an error-correcting coding framework in which each coded symbol is constrained to be a function of a fixed subset of the message symbols. With an eye toward distributed storage applications, we seek to design systematic codes…
In this paper, we study how often unique decoding from $t$ insertions or $t$ deletions occurs for error correcting codes. Insertions and deletions frequently occur in synchronization problems and DNA, a medium which is beginning to be used…
The original Calder\'on problem consists in recovering the potential (or the conductivity) from the knowledge of the related Neumann to Dirichlet map (or Dirichlet to Neumann map). Here, we first perturb the medium by injecting small-scaled…
A setup involving zero-delay sequential transmission of a vector Markov source over a burst erasure channel is studied. A sequence of source vectors is compressed in a causal fashion at the encoder, and the resulting output is transmitted…
We consider the phylogenetic tree reconstruction problem with insertions and deletions (indels). Phylogenetic algorithms proceed under a model where sequences evolve down the model tree, and given sequences at the leaves, the problem is to…
Let $n,q,t,s,p$ be non-negative integers where $n\geq s$ and $q\geq 1$. For $\mathbf{x}\in A_{q}^{n}\triangleq\{ 0,1,\ldots,q-1 \}^{n}$, let the $t$-insertion $s$-deletion $p$-substitution ball of $\mathbf{x}$, denoted by…
This paper considers the classical error correcting problem which is frequently discussed in coding theory. We wish to recover an input vector $f \in \R^n$ from corrupted measurements $y = A f + e$. Here, $A$ is an $m$ by $n$ (coding)…
In the near future, the Internet of Things will interconnect billions of devices, forming a vast network where users sporadically transmit short messages through multi-path wireless channels. These channels are characterized by the…
In the \emph{trace reconstruction problem}, an unknown source string $x \in \{0,1\}^n$ is sent through a probabilistic \emph{deletion channel} which independently deletes each bit with probability $\delta$ and concatenates the surviving…
This paper considers multiplexing two sequences of messages with two different decoding delays over a packet erasure channel. In each time slot, the source constructs a packet based on the current and previous messages and transmits the…
This paper extends the foundational work of Dollma \emph{et al}. on codes for ordered composite DNA sequences. We consider the general setting with an alphabet of size $q$ and a resolution parameter $k$, moving beyond the binary ($q=2$)…
In the classical source coding problem, the compressed source is reconstructed at the decoder with respect to some distortion metric. Motivated by settings in which we are interested in more than simply reconstructing the compressed source,…
The problem of designing codes for deletion-correction and synchronization has received renewed interest due to applications in DNA-based data storage systems that use nanopore sequencers as readout platforms. In almost all instances,…
We consider the following graph reconstruction problem: given an unweighted connected graph $G = (V,E)$ with visible vertex set $V$ and an oracle which takes two vertices $u,v \in V$ and returns the shortest path distance between $u$ and…
A reconstruction problem of words from scattered factors asks for the minimal information, like multisets of scattered factors of a given length or the number of occurrences of scattered factors from a given set, necessary to uniquely…
The problem of correcting deletions has received significant attention, partly because of the prevalence of these errors in DNA data storage. In this paper, we study the problem of correcting a consecutive burst of at most $t$ deletions in…
This paper is concerned with the question of reconstructing a vector in a finite-dimensional complex Hilbert space when only the magnitudes of the coefficients of the vector under a redundant linear map are known. We present new…
Recovery sets for vectors and subspaces are important in the construction of distributed storage system codes. These concepts are also interesting in their own right. In this paper, we consider the following very basic recovery question:…