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Deep convolutional neural networks (CNNs) have achieved remarkable success in various fields. However, training an excellent CNN is practically a trial-and-error process that consumes a tremendous amount of time and computer resources. To…
Digital pathology has recently been revolutionized by advancements in artificial intelligence, deep learning, and high-performance computing. With its advanced tools, digital pathology can help improve and speed up the diagnostic process,…
Computer-aided analysis of biological microscopy data has seen a massive improvement with the utilization of general-purpose deep learning techniques. Yet, in microscopy studies of multi-organism systems, the problem of collision and…
Up-to-date catalogs of the urban tree population are important for municipalities to monitor and improve quality of life in cities. Despite much research on automation of tree mapping, mainly relying on dedicated airborne LiDAR or…
In this paper, we propose an effective pipeline for clothes retrieval system which has sturdiness on large-scale real-world fashion data. Our proposed method consists of three components: detection, retrieval, and post-processing. We…
The placenta is a complex organ, playing multiple roles during fetal development. Very little is known about the association between placental morphological abnormalities and fetal physiology. In this work, we present an open sourced,…
Aphid infestation poses a significant threat to crop production, rural communities, and global food security. While chemical pest control is crucial for maximizing yields, applying chemicals across entire fields is both environmentally…
We introduce a lightweight experimentation pipeline designed to lower the barrier for applying machine learning (ML) methods for classifying images in ecological research. We enable ecologists to experiment with ML models independently,…
This paper is an investigation into aspects of an audio classification pipeline that will be appropriate for the monitoring of bird species on edges devices. These aspects include transfer learning, data augmentation and model optimization.…
Deep learning is used in computer vision problems with important applications in several scientific fields. In ecology for example, there is a growing interest in deep learning for automatizing repetitive analyses on large amounts of…
Modern scientific and technological advances allow botanists to use computer vision-based approaches for plant identification tasks. These approaches have their own challenges. Leaf classification is a computer-vision task performed for the…
Having accurate, detailed, and up-to-date information about the location and behavior of animals in the wild would revolutionize our ability to study and conserve ecosystems. We investigate the ability to automatically, accurately, and…
The goal of this paper is to present a new efficient image segmentation method based on evolutionary computation which is a model inspired from human behavior. Based on this model, a four layer process for image segmentation is proposed…
One third of food produced in the world for human consumption -- approximately 1.3 billion tons -- is lost or wasted every year. By classifying food waste of individual consumers and raising awareness of the measures, avoidable food waste…
Scene parsing, or semantic segmentation, consists in labeling each pixel in an image with the category of the object it belongs to. It is a challenging task that involves the simultaneous detection, segmentation and recognition of all the…
Machine- and deep-learning approaches for biological sequences depend critically on transforming raw DNA, RNA, and protein FASTA files into informative numerical representations. However, this process is often fragmented across multiple…
Deep trackers have proven success in visual tracking. Typically, these trackers employ optimally pre-trained deep networks to represent all diverse objects with multi-channel features from some fixed layers. The deep networks employed are…
One of the most common modes of representing engineering schematics are Piping and Instrumentation diagrams (P&IDs) that describe the layout of an engineering process flow along with the interconnected process equipment. Over the years,…
Currently, a variety of pipeline tools are available for use in data engineering. Data scientists can use these tools to resolve data wrangling issues associated with data and accomplish some data engineering tasks from data ingestion…
Diagnosis of fungal infections can rely on microscopic examination, however, in many cases, it does not allow unambiguous identification of the species due to their visual similarity. Therefore, it is usually necessary to use additional…