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One of the challenges in modeling cognitive events from electroencephalogram (EEG) data is finding representations that are invariant to inter- and intra-subject differences, as well as to inherent noise associated with such data. Herein,…

Machine Learning · Computer Science 2016-03-02 Pouya Bashivan , Irina Rish , Mohammed Yeasin , Noel Codella

Deep neural networks have shown promising results for various clinical prediction tasks. However, training deep networks such as those based on Recurrent Neural Networks (RNNs) requires large labeled data, significant hyper-parameter tuning…

Machine Learning · Computer Science 2021-03-05 Priyanka Gupta , Pankaj Malhotra , Jyoti Narwariya , Lovekesh Vig , Gautam Shroff

To develop a preliminary understanding towards Graph Foundation Models, we study the extent to which pretrained Graph Neural Networks can be applied across datasets, an effort requiring to be agnostic to dataset-specific features and their…

In conventional machine learning (ML) approaches applied to electroencephalography (EEG), this is often a limited focus, isolating specific brain activities occurring across disparate temporal scales (from transient spikes in milliseconds…

Quantitative Methods · Quantitative Biology 2024-02-06 Jonathan W. Kim , Ahmed Alaa , Danilo Bernardo

Neurophysiological time series recordings like the electroencephalogram (EEG) or local field potentials are obtained from multiple sensors. They can be decoded by machine learning models in order to estimate the ongoing brain state of a…

Signal Processing · Electrical Eng. & Systems 2023-04-14 Pierre Guetschel , Théodore Papadopoulo , Michael Tangermann

The successes of foundation models such as ChatGPT and AlphaFold have spurred significant interest in building similar models for electronic medical records (EMRs) to improve patient care and hospital operations. However, recent hype has…

Electroencephalography (EEG) stands as a crucial tool in neuroscientific research and clinical diagnostics, providing valuable insights into the electrical activities of the brain. Traditional EEG signal processing techniques, predominantly…

Neurons and Cognition · Quantitative Biology 2024-01-12 Aryan Govil , Eric Yao , Christina R. Borao

Given a cardiac-arrest patient being monitored in the ICU (intensive care unit) for brain activity, how can we predict their health outcomes as early as possible? Early decision-making is critical in many applications, e.g. monitoring…

Machine Learning · Computer Science 2023-11-16 Shubhranshu Shekhar , Dhivya Eswaran , Bryan Hooi , Jonathan Elmer , Christos Faloutsos , Leman Akoglu

Time series analysis stands as a focal point within the data mining community, serving as a cornerstone for extracting valuable insights crucial to a myriad of real-world applications. Recent advances in Foundation Models (FMs) have…

Machine Learning · Computer Science 2024-06-19 Yuxuan Liang , Haomin Wen , Yuqi Nie , Yushan Jiang , Ming Jin , Dongjin Song , Shirui Pan , Qingsong Wen

This paper asks whether integrating multimodal EEG and fMRI data offers a better characterisation of functional brain architectures than either modality alone. This evaluation rests upon a dynamic causal model that generates both EEG and…

Quantitative Methods · Quantitative Biology 2019-06-19 Huilin Wei , Amirhossein Jafarian , Peter Zeidman , Vladimir Litvak , Adeel Razi , Dewen Hu , Karl J. Friston

Electroencephalography (EEG) is a vital tool to measure and record brain activity in neuroscience and clinical applications, yet its potential is constrained by signal heterogeneity, low signal-to-noise ratios, and limited labeled datasets.…

Machine Learning · Computer Science 2024-09-20 Enze Shi , Kui Zhao , Qilong Yuan , Jiaqi Wang , Huawen Hu , Sigang Yu , Shu Zhang

Foundation models hold promise for transforming AI in healthcare by providing modular components that are easily adaptable to downstream healthcare tasks, making AI development more scalable and cost-effective. Structured EHR foundation…

At present, people usually use some methods based on convolutional neural networks (CNNs) for Electroencephalograph (EEG) decoding. However, CNNs have limitations in perceiving global dependencies, which is not adequate for common EEG…

Signal Processing · Electrical Eng. & Systems 2021-06-23 Yonghao Song , Xueyu Jia , Lie Yang , Longhan Xie

Learning transferable representations for electroencephalography (EEG) remains challenging because EEG signals are inherently multi-channel and non-stationary. Channels observed at the same time provide coupled measurements of neural…

Machine Learning · Computer Science 2026-05-13 Fan Ma , Qier An , Peng Chen , Lingfei Qian , Xiang Lan , Mingyang Jiang , Zhiling Gu , Xenophon Papademetris , Hua Xu

Electroencephalograph (EEG) timeseries signals are characterized by significant noise and coarse spatial resolution, which complicates the classification of neurodegenerative diseases. Even SOTA deep learning architectures struggle to…

Machine Learning · Computer Science 2026-05-26 Tawsik Jawad , Gowtham Atluri , Vikram Ravindra

Foundation models are reshaping EEG analysis, yet an important problem of EEG tokenization remains a challenge. This paper presents TFM-Tokenizer, a novel tokenization framework that learns a vocabulary of time-frequency motifs from…

Machine Learning · Computer Science 2026-05-15 Jathurshan Pradeepkumar , Xihao Piao , Zheng Chen , Jimeng Sun

Traditional time series models are task-specific and often depend on dataset-specific training and extensive feature engineering. While Transformer-based architectures have improved scalability, foundation models, commonplace in text,…

Machine Learning · Computer Science 2025-05-21 Utsav Dutta , Sina Khoshfetrat Pakazad , Henrik Ohlsson

The recent availability of large datasets in bio-medicine has inspired the development of representation learning methods for multiple healthcare applications. Despite advances in predictive performance, the clinical utility of such methods…

Signal Processing · Electrical Eng. & Systems 2022-10-18 Neeraj Wagh , Jionghao Wei , Samarth Rawal , Brent M. Berry , Yogatheesan Varatharajah

Electroencephalography (EEG) and magnetoencephalography (MEG) measure neural activity non-invasively by capturing electromagnetic fields generated by dendritic currents. Although rooted in the same biophysics, EEG and MEG exhibit distinct…

Signal Processing · Electrical Eng. & Systems 2025-10-16 Qinfan Xiao , Ziyun Cui , Chi Zhang , Siqi Chen , Wen Wu , Andrew Thwaites , Alexandra Woolgar , Bowen Zhou , Chao Zhang

With the widespread application of electroencephalography (EEG) in neuroscience and clinical practice, efficiently retrieving and semantically interpreting large-scale, multi-source, heterogeneous EEG data has become a pressing challenge.…

Computation and Language · Computer Science 2025-10-14 Yi Wang , Haoran Luo , Lu Meng , Ziyu Jia , Xinliang Zhou , Qingsong Wen