English
Related papers

Related papers: InertialAR: Autoregressive 3D Molecule Generation …

200 papers

Rapid advancements in machine learning (ML) are transforming materials science by significantly speeding up material property calculations. However, the proliferation of ML approaches has made it challenging for scientists to keep up with…

Machine Learning · Computer Science 2024-07-12 Ali Ramlaoui , Théo Saulus , Basile Terver , Victor Schmidt , David Rolnick , Fragkiskos D. Malliaros , Alexandre Duval

Diffusion-based generative models have reformed generative AI, and also enabled new capabilities in the science domain, e.g., fast generation of 3D structures of molecules. In such tasks, there is often a symmetry in the system, identifying…

Machine Learning · Computer Science 2026-05-15 Yixian Xu , Yusong Wang , Shengjie Luo , Kaiyuan Gao , Tianyu He , Di He , Chang Liu

We develop a new, efficient, and accurate method to simulate frequency-domain borehole electromagnetic (EM) measurements acquired in the presence of three-dimensional (3D) variations of the anisotropic subsurface conductivity. The method is…

Autoregressive (AR) models have garnered significant attention in image generation for their ability to effectively capture both local and global structures within visual data. However, prevalent AR models predominantly rely on the…

Computer Vision and Pattern Recognition · Computer Science 2025-07-03 Yuxin Mao , Zhen Qin , Jinxing Zhou , Hui Deng , Xuyang Shen , Bin Fan , Jing Zhang , Yiran Zhong , Yuchao Dai

Feed-forward 3D reconstruction models based on Vision Transformers can directly estimate scene geometry and camera poses from a small set of input images, but scaling them to video inputs with hundreds or thousands of frames remains…

Computer Vision and Pattern Recognition · Computer Science 2026-05-20 Zecheng Tang , Jiaye Fu , Qiankun Gao , Haijie Li , Yanmin Wu , Jiaqi Zhang , Siwei Ma , Jian Zhang

It is well known that Drug Design is often a costly process both in terms of time and economic effort. While good Quantitative Structure-Activity Relationship models (QSAR) can help predicting molecular properties without the need to…

Biomolecules · Quantitative Biology 2022-02-14 Dylan Savoia , Alessio Ragno , Roberto Capobianco

As Vision-Language Models (VLMs) become increasingly sophisticated and widely used, it becomes more and more crucial to understand their decision-making process. Traditional explainability methods, designed for classification tasks,…

Computer Vision and Pattern Recognition · Computer Science 2026-03-09 Walid Bousselham , Angie Boggust , Hendrik Strobelt , Hilde Kuehne

Deep generative models have been applied with increasing success to the generation of two dimensional molecules as SMILES strings and molecular graphs. In this work we describe for the first time a deep generative model that can generate 3D…

Chemical Physics · Physics 2020-11-24 Tomohide Masuda , Matthew Ragoza , David Ryan Koes

Molecule property prediction is a fundamental problem for computer-aided drug discovery and materials science. Quantum-chemical simulations such as density functional theory (DFT) have been widely used for calculating the molecule…

Machine Learning · Computer Science 2019-11-26 Hiroyuki Shindo , Yuji Matsumoto

Image Super-Resolution (ISR) has seen significant progress with the introduction of remarkable generative models. However, challenges such as the trade-off issues between fidelity and realism, as well as computational complexity, have also…

Computer Vision and Pattern Recognition · Computer Science 2025-02-03 Yunpeng Qu , Kun Yuan , Jinhua Hao , Kai Zhao , Qizhi Xie , Ming Sun , Chao Zhou

Molecular conformation generation, a critical aspect of computational chemistry, involves producing the three-dimensional conformer geometry for a given molecule. Generating molecular conformation via diffusion requires learning to reverse…

Computational Physics · Physics 2023-10-10 Zihan Zhou , Ruiying Liu , Chaolong Ying , Ruimao Zhang , Tianshu Yu

Auto-regressive (AR) models have recently made notable progress in image generation, achieving performance comparable to diffusion-based approaches. However, their computational intensity and sequential nature impede on-device deployment,…

Computer Vision and Pattern Recognition · Computer Science 2026-03-27 Keming Ye , Zhou Zhao , Fan Wu , Shengyu Zhang

n this work, we propose a latent molecular diffusion model that can make the generated 3D molecules rich in diversity and maintain rich geometric features. The model captures the information of the forces and local constraints between atoms…

Machine Learning · Computer Science 2024-12-06 Xiang Chen

Recent 3D molecular generation methods primarily use asynchronous auto-regressive or synchronous diffusion models. While auto-regressive models build molecules sequentially, they're limited by a short horizon and a discrepancy between…

Machine Learning · Computer Science 2026-04-27 Junyi An , Chao Qu , Yun-Fei Shi , Zhijian Zhou , Fenglei Cao , Yuan Qi

Autoregressive (AR) models have been the dominating approach to conditional sequence generation, but are suffering from the issue of high inference latency. Non-autoregressive (NAR) models have been recently proposed to reduce the latency…

Machine Learning · Computer Science 2020-07-01 Zhiqing Sun , Yiming Yang

We study a fundamental problem in computational chemistry known as molecular conformation generation, trying to predict stable 3D structures from 2D molecular graphs. Existing machine learning approaches usually first predict distances…

Machine Learning · Computer Science 2021-06-09 Chence Shi , Shitong Luo , Minkai Xu , Jian Tang

Designing molecules with specific properties is a long-lasting research problem and is central to advancing crucial domains such as drug discovery and material science. Recent advances in deep graph generative models treat molecule design…

Machine Learning · Computer Science 2022-03-02 Yuanqi Du , Xiaojie Guo , Amarda Shehu , Liang Zhao

Autoregressive (AR) models, common in sequence generation, are limited in many biological tasks such as de novo peptide sequencing and protein modeling by their unidirectional nature, failing to capture crucial global bidirectional token…

Machine Learning · Computer Science 2025-12-12 Xiang Zhang , Jiaqi Wei , Zijie Qiu , Sheng Xu , Zhi Jin , ZhiQiang Gao , Nanqing Dong , Siqi Sun

Implicit neural representations have shown compelling results in offline 3D reconstruction and also recently demonstrated the potential for online SLAM systems. However, applying them to autonomous 3D reconstruction, where a robot is…

Computer Vision and Pattern Recognition · Computer Science 2023-02-09 Yunlong Ran , Jing Zeng , Shibo He , Lincheng Li , Yingfeng Chen , Gimhee Lee , Jiming Chen , Qi Ye

In this paper, we propose ZipAR, a training-free, plug-and-play parallel decoding framework for accelerating auto-regressive (AR) visual generation. The motivation stems from the observation that images exhibit local structures, and…

Computer Vision and Pattern Recognition · Computer Science 2025-07-01 Yefei He , Feng Chen , Yuanyu He , Shaoxuan He , Hong Zhou , Kaipeng Zhang , Bohan Zhuang