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It is a significant challenge to predict the network topology from a small amount of dynamical observations. Different from the usual framework of the node-based reconstruction, two optimization approaches (i.e., the global and partitioned…

Physics and Society · Physics 2016-03-03 Ming Xu , Chuan-Yun Xu , Huan Wang , Yong-Kui Li , Jing-Bo Hu , Ke-Fei Cao

We present and discuss the results of an experimental analysis in the design of Boolean networks by means of genetic algorithms. A population of networks is evolved with the aim of finding a network such that the attractor it reaches is of…

Neural and Evolutionary Computing · Computer Science 2011-02-01 Andrea Roli , Cristian Arcaroli , Marco Lazzarini , Stefano Benedettini

We study the problem of generating graphs with prescribed degree sequences for bipartite, directed, and undirected networks. We first propose a sequential method for bipartite graph generation and establish a necessary and sufficient…

Methodology · Statistics 2026-03-13 Tong Sun , Jianshu Hao , Michael C. Fu , Guangxin Jiang

Networks are often characterized by node heterogeneity for which nodes exhibit different degrees of interaction and link homophily for which nodes sharing common features tend to associate with each other. In this paper, we propose a new…

Methodology · Statistics 2018-03-13 Ting Yan , Binyan Jiang , Stephen E. Fienberg , Chenlei Leng

Biological processes, including cell differentiation, organism development, and disease progression, can be interpreted as attractors (fixed points or limit cycles) of an underlying networked dynamical system. In this paper, we study the…

Systems and Control · Computer Science 2017-01-20 Andrew Clark , Phillip Lee , Basel Alomair , Linda Bushnell , Radha Poovendran

Many real-world networks are intrinsically directed. Such networks include activation of genes, hyperlinks on the internet, and the network of followers on Twitter among many others. The challenge, however, is to create a network model that…

Social and Information Networks · Computer Science 2022-04-15 Jesse Michel , Sushruth Reddy , Rikhav Shah , Sandeep Silwal , Ramis Movassagh

Network control refers to a very large and diverse set of problems including controllability of linear time-invariant dynamical systems, where the objective is to select an appropriate input to steer the network to a desired state. There…

Data Structures and Algorithms · Computer Science 2016-03-25 Mohamad Kazem Shirani Faradonbeh , Ambuj Tewari , George Michailidis

Inspired by empirical studies of networked systems such as the Internet, social networks, and biological networks, researchers have in recent years developed a variety of techniques and models to help us understand or predict the behavior…

Statistical Mechanics · Physics 2015-06-24 M. E. J. Newman

Bipartite networks provide an effective resource for representing, characterizing, and modeling several abstract and real-world systems and structures involving binary relations, which include food webs, social interactions, and…

Social and Information Networks · Computer Science 2024-02-01 Alexandre Benatti , Luciano da F. Costa

Bipartite networks provide a major insight into the organisation of many real-world systems. One of the most relevant issues encountered when modelling a bipartite network is that of facing the information shortage concerning intra-layer…

Physics and Society · Physics 2025-07-11 Anna Gallo , Fabio Saracco , Tiziano Squartini

We introduce a new approach to constructing networks with realistic features. Our method, in spite of its conceptual simplicity (it has only two parameters) is capable of generating a wide variety of network types with prescribed…

Data Analysis, Statistics and Probability · Physics 2010-04-30 G. Palla , L. Lovasz , T. Vicsek

The trophic levels of nodes in directed networks can reveal their functional properties. Moreover, the trophic coherence of a network, defined in terms of trophic levels, is related to properties such as cycle structure, stability and…

Physics and Society · Physics 2020-01-16 R. S. MacKay , S. Johnson , B. Sansom

Random networks are intensively used as null models to investigate properties of complex networks. We describe an efficient and accurate algorithm to generate arbitrarily two-point correlated undirected random networks without self- or…

Statistical Mechanics · Physics 2007-10-22 Sebastian Weber , Markus Porto

This paper investigates the distributed continuous-time nonconvex optimization problem over unbalanced directed networks. The objective is to cooperatively drive all the agent states to an optimal solution that minimizes the sum of the…

Optimization and Control · Mathematics 2022-12-01 Jin Zhang , Yahui Hao , Lu Liu , Haibo Ji

The development of algorithms for enhancing the resilience and efficiency of the power grid requires performance evaluation with real topologies of power transmission networks. However, due to security reasons, such topologies and…

Systems and Control · Computer Science 2015-08-20 Saleh Soltan , Gil Zussman

Clustering mechanisms are essential in certain multiuser networks for achieving efficient resource utilization. This lecture note presents the theory of coalition formation as a useful tool for distributed clustering problems. We reveal the…

Computer Science and Game Theory · Computer Science 2017-01-24 Rami Mochaourab , Eduard Jorswieck , Mats Bengtsson

We consider the problem of adding a fixed number of new edges to an undirected graph in order to minimize the diameter of the augmented graph, and under the constraint that the number of edges added for each vertex is bounded by an integer.…

Data Structures and Algorithms · Computer Science 2023-02-14 Florian Adriaens , Aristides Gionis

Although the set of permutation symmetries of a complex network can be very large, few of the symmetries give rise to stable synchronous patterns. Here we present a new framework and develop techniques for controlling synchronization…

Chaotic Dynamics · Physics 2016-05-04 Weijie Lin , Huawei Fan , Ying Wang , Heping Ying , Xingang Wang

Statistical methods for reconstructing networks from repeated measurements typically assume that all measurements are generated from the same underlying network structure. This need not be the case, however. People's social networks might…

Social and Information Networks · Computer Science 2022-01-25 Jean-Gabriel Young , Alec Kirkley , M. E. J. Newman

Biological systems are driven by intricate interactions among the complex array of molecules that comprise the cell. Many methods have been developed to reconstruct network models of those interactions. These methods often draw on large…

Molecular Networks · Quantitative Biology 2018-06-29 Marieke Lydia Kuijjer , Matthew Tung , GuoCheng Yuan , John Quackenbush , Kimberly Glass