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The Agent Based Model community has a rich and diverse ecosystem of libraries, platforms, and applications to help modelers develop rigorous simulations. Despite this robust and diverse ecosystem, the complexity of life from microbial…

Computers and Society · Computer Science 2021-11-16 Thomas Pike , Samantha Golden , Daniel Lowdermilk , Brandon Luong , Benjamin Rosado

Since the first observations of interstellar molecules, astrochemical simulations have been employed to model and understand its formation and destruction path- ways. With the advent of high-resolution telescopes such as JWST and ALMA, the…

JAX is widely used in machine learning and scientific computing, the latter of which often relies on existing high-performance code that we would ideally like to incorporate into JAX. Reimplementing the existing code in JAX is often…

Instrumentation and Methods for Astrophysics · Physics 2024-06-28 Jakob Roth , Martin Reinecke , Gordian Edenhofer

High-performance scientific applications require more and more compute power. The concurrent use of multiple distributed compute resources is vital for making scientific progress. The resulting distributed system, a so-called Jungle…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-03-05 Niels Drost , Jason Maassen , Maarten A. J. van Meersbergen , Henri E. Bal , F. Inti Pelupessy , Simon Portegies Zwart , Michael Kliphuis , Henk A. Dijkstra , Frank J. Seinstra

Describing the relationship between the variables in a study domain and modelling the data generating mechanism is a fundamental problem in many empirical sciences. Probabilistic graphical models are one common approach to tackle the…

Machine Learning · Statistics 2023-12-05 Felix L. Rios , Giusi Moffa , Jack Kuipers

Neurosymbolic learning enables the integration of symbolic reasoning with deep learning but faces significant challenges in scaling to complex symbolic programs, large datasets, or both. We introduce DOLPHIN, a framework that tackles these…

Machine Learning · Computer Science 2026-01-01 Aaditya Naik , Jason Liu , Claire Wang , Amish Sethi , Saikat Dutta , Mayur Naik , Eric Wong

Large Language Models (LLMs) can generate code, but can they generate fast code for complex, real-world software systems? In this study, we investigate this question using a dataset of 65 tasks mined from performance-critical open-source…

Software Engineering · Computer Science 2026-04-10 Lirong Yi , Gregory Gay , Philipp Leitner

Instruction tuning is vital for enhancing the performance of large language models (LLMs), but existing text-to-text methods, referred to as TextTuning, struggle with issues such as generalization, robustness, and controllability due to…

Computation and Language · Computer Science 2025-06-10 Chang Gao , Wenxuan Zhang , Guizhen Chen , Wai Lam

Benchmarking involves designing, running and disseminating rigorous performance assessments of methods, most often for data analysis and software tools, but the process can also be applied to experimental systems. Ideally, a benchmarking…

Other Quantitative Biology · Quantitative Biology 2026-02-12 Izaskun Mallona , Almut Luetge , Ben Carrillo , Daniel Incicau , Reto Gerber , Aidan Meara , Anthony Sonrel , Charlotte Soneson , Mark D. Robinson

World Models have emerged as a powerful paradigm for learning compact, predictive representations of environment dynamics, enabling agents to reason, plan, and generalize beyond direct experience. Despite recent interest in World Models,…

Artificial Intelligence · Computer Science 2026-02-18 Lucas Maes , Quentin Le Lidec , Dan Haramati , Nassim Massaudi , Damien Scieur , Yann LeCun , Randall Balestriero

We introduce WebChain, the largest open-source dataset of human-annotated trajectories on real-world websites, designed to accelerate reproducible research in web agents. It contains 31,725 trajectories and 318k steps, featuring a core…

Artificial Intelligence · Computer Science 2026-04-15 Sicheng Fan , Rui Wan , Yifei Leng , Gaoning Liang , Li Ling , Yanyi Shang , Dehan Kong

DORAEMON is an open-source PyTorch library that unifies visual object modeling and representation learning across diverse scales. A single YAML-driven workflow covers classification, retrieval and metric learning; more than 1000 pretrained…

Computer Vision and Pattern Recognition · Computer Science 2025-11-07 Ke Du , Yimin Peng , Chao Gao , Fan Zhou , Siqiao Xue

We introduce MOSAIC, a Python program for machine learning models. Our framework is developed with in mind accelerating machine learning studies through making implementing and testing arbitrary network architectures and data sets simpler,…

Machine Learning · Computer Science 2023-01-31 Mattéo Papin , Yann Beaujeault-Taudière , Frédéric Magniette

Joint Energy-based Model (JEM) is a recently proposed hybrid model that retains strong discriminative power of modern CNN classifiers, while generating samples rivaling the quality of GAN-based approaches. In this paper, we propose a…

Machine Learning · Computer Science 2021-09-22 Xiulong Yang , Shihao Ji

Developing foundation models in medical imaging requires continuous monitoring of downstream performance. Researchers are burdened with tracking numerous experiments, design choices, and their effects on performance, often relying on…

Computer Vision and Pattern Recognition · Computer Science 2026-04-02 Jan Tagscherer , Sarah de Boer , Lena Philipp , Fennie van der Graaf , Dré Peeters , Joeran Bosma , Lars Leijten , Bogdan Obreja , Ewoud Smit , Alessa Hering

Machine learning has shown growing success in recent years. However, current machine learning systems are highly specialized, trained for particular problems or domains, and typically on a single narrow dataset. Human learning, on the other…

Machine Learning · Computer Science 2020-02-18 Emmanouil Antonios Platanios , Abulhair Saparov , Tom Mitchell

WebAssembly (Wasm for short) brings a new, powerful capability to the web as well as Edge, IoT, and embedded systems. Wasm is a portable, compact binary code format with high performance and robust sandboxing properties. As Wasm…

Programming Languages · Computer Science 2024-09-04 Doehyun Baek , Jakob Getz , Yusung Sim , Daniel Lehmann , Ben L. Titzer , Sukyoung Ryu , Michael Pradel

Training data mixtures greatly impact the generalization performance of large language models. Existing domain reweighting methods often rely on costly weight computations and require retraining when new data is introduced. To this end, we…

Machine Learning · Computer Science 2025-06-02 Wanyun Xie , Francesco Tonin , Volkan Cevher

We present an implementation of interval analysis and mixed monotone interval reachability analysis as function transforms in Python, fully composable with the computational framework JAX. The resulting toolbox inherits several key features…

Systems and Control · Electrical Eng. & Systems 2024-05-02 Akash Harapanahalli , Saber Jafarpour , Samuel Coogan

The unsupervised task of Joint Alignment (JA) of images is beset by challenges such as high complexity, geometric distortions, and convergence to poor local or even global optima. Although Vision Transformers (ViT) have recently provided…

Computer Vision and Pattern Recognition · Computer Science 2025-05-21 Nir Barel , Ron Shapira Weber , Nir Mualem , Shahaf E. Finder , Oren Freifeld