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Automatically extracting key information from scientific documents has the potential to help scientists work more efficiently and accelerate the pace of scientific progress. Prior work has considered extracting document-level entity…

Digital Libraries · Computer Science 2021-06-04 Vijay Viswanathan , Graham Neubig , Pengfei Liu

Dealing with uncertainty in applications of machine learning to real-life data critically depends on the knowledge of intrinsic dimensionality (ID). A number of methods have been suggested for the purpose of estimating ID, but no standard…

Machine Learning · Computer Science 2023-12-07 Jonathan Bac , Evgeny M. Mirkes , Alexander N. Gorban , Ivan Tyukin , Andrei Zinovyev

mmid (Multi-Modal Integration and Downstream analyses for healthcare analytics) is a Python package that offers multi-modal fusion and imputation, classification, time-to-event prediction and clustering functionalities under a single…

We describe PyRaTE, a new, non-local thermodynamic equilibrium (non-LTE) line radiative transfer code developed specifically for post-processing astrochemical simulations. Population densities are estimated using the escape probability…

Astrophysics of Galaxies · Physics 2018-05-30 Aris Tritsis , Harold W. Yorke , Konstantinos Tassis

Computer simulation has become one of the most important tools in scientific research in many disciplines. Benefiting from the dynamical trajectories regulated by versatile interatomic interactions, various material properties can be…

Materials Science · Physics 2024-11-28 Y. -C. Hu , J. Tian

Spectral line observations encode a wealth of information. A key challenge, therefore, lies in the interpretation of these observations in terms of models to derive the physical and chemical properties of the astronomical environments from…

Instrumentation and Methods for Astrophysics · Physics 2024-09-06 Frederik De Ceuster , Thomas Ceulemans , Leen Decin , Taïssa Danilovich , Jeremy Yates

We introduce GraSPy, a Python library devoted to statistical inference, machine learning, and visualization of random graphs and graph populations. This package provides flexible and easy-to-use algorithms for analyzing and understanding…

Social and Information Networks · Computer Science 2019-10-25 Jaewon Chung , Benjamin D. Pedigo , Eric W. Bridgeford , Bijan K. Varjavand , Hayden S. Helm , Joshua T. Vogelstein

Topological entanglement entropy (TEE) is an efficient way to detect topological order in the ground state of gapped Hamiltonians. The seminal work of Kitaev and Preskill~\cite{preskill-kitaev-tee} and simultaneously by Levin and…

Quantum Physics · Physics 2026-05-05 Joydeep Naskar , Sai Satyam Samal

Despite the explosion of interest in healthcare AI research, the reproducibility and benchmarking of those research works are often limited due to the lack of standard benchmark datasets and diverse evaluation metrics. To address this…

Machine Learning · Computer Science 2021-01-13 Yue Zhao , Zhi Qiao , Cao Xiao , Lucas Glass , Jimeng Sun

Latte (for LATent Tensor Evaluation) is a Python library for evaluation of latent-based generative models in the fields of disentanglement learning and controllable generation. Latte is compatible with both PyTorch and TensorFlow/Keras, and…

Machine Learning · Computer Science 2022-03-24 Karn N. Watcharasupat , Junyoung Lee , Alexander Lerch

PyEOC is an open-source Python code for determining electro-optic (EO) coefficients of thin-film materials from the static and dynamic reflectivity measurements. It uses the experimental results, the transfer-matrix method and implements a…

Materials Science · Physics 2022-05-12 Sidi Ould Saad Hamady

Knowledge graph (KG) embedding methods which map entities and relations to unique embeddings in the KG have shown promising results on many reasoning tasks. However, the same embedding dimension for both dense entities and sparse entities…

Computation and Language · Computer Science 2022-05-06 Linlin Chao , Xiexiong Lin , Taifeng Wang , Wei Chu

Seismology has witnessed significant advancements in recent years with the application of deep learning methods to address a broad range of problems. These techniques have demonstrated their remarkable ability to effectively extract…

QuaPy is an open-source framework for performing quantification (a.k.a. supervised prevalence estimation), written in Python. Quantification is the task of training quantifiers via supervised learning, where a quantifier is a predictor that…

Machine Learning · Computer Science 2021-06-22 Alejandro Moreo , Andrea Esuli , Fabrizio Sebastiani

We describe our contribution as industrial stakeholders to the existing open-source GPU4PySCF project (https: //github.com/pyscf/gpu4pyscf), a GPU-accelerated Python quantum chemistry package. We have integrated GPU acceleration into other…

We present efficient combinatorial parameterized algorithms for several classical graph-based counting problems in computational chemistry, including (i) Kekule structures, (ii) the Hosoya index, (iii) the Merrifield-Simmons index, and (iv)…

Data Structures and Algorithms · Computer Science 2025-08-12 Giovanna K. Conrado , Amir K. Goharshady , Harshit J. Motwani , Sergei Novozhilov

Recent developments in many-body potential energy representation via deep learning have brought new hopes to addressing the accuracy-versus-efficiency dilemma in molecular simulations. Here we describe DeePMD-kit, a package written in…

Computational Physics · Physics 2018-05-23 Han Wang , Linfeng Zhang , Jiequn Han , Weinan E

This paper presents a Python software package, Ph3pyWF, providing a more convenient platform to realize high-throughput analysis of lattice thermal conductivity for ceramic materials. The interface of Ph3pyWF is friendly for users with…

Materials Science · Physics 2023-02-24 Kerui Lai , Yuxuan Wang

We introduce a systematic method for constructing polytope approximations to the quantum set in a variety of device-independent quantum random number generation (DI-QRNG) protocols. Our approach relies on two general-purpose algorithms that…

Quantum Physics · Physics 2026-03-11 Hyejung H. Jee , Florian J. Curchod , Mafalda L. Almeida

PetroFit is an open-source Python package, based on Astropy and Photutils, that can calculate Petrosian profiles and fit galaxy images. It offers end-to-end tools for making accurate photometric measurements, estimating morphological…

Instrumentation and Methods for Astrophysics · Physics 2022-04-19 Robel Geda , Steven Crawford , Lucas R. Hunt , Matthew A. Bershady , Erik J. Tollerud , Solohery M. Randriamampandry