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The latest advancements in machine learning, specifically in foundation models, are revolutionizing the frontiers of existing software engineering (SE) processes. This is a bi-directional phenomona, where 1) software systems are now…

Software Engineering · Computer Science 2024-06-27 Luís Cruz , Xavier Franch Gutierrez , Silverio Martínez-Fernández

Artificial intelligence has provided us with an exploration of a whole new research era. As more data and better computational power become available, the approach is being implemented in various fields. The demand for it in health…

Machine Learning · Computer Science 2020-08-11 Gloria Hyunjung Kwak , Pan Hui

Over the past decade, advances in generative modeling, such as generative adversarial networks, masked autoencoders, and diffusion models, have significantly transformed biological research and discovery, enabling breakthroughs in molecule…

Machine Learning · Computer Science 2026-03-10 Zihao Li , Zhichen Zeng , Xiao Lin , Feihao Fang , Yanru Qu , Zhe Xu , Zhining Liu , Xuying Ning , Tianxin Wei , Ge Liu , Hanghang Tong , Jingrui He

Conservation science is an interdisciplinary field that primarily draws on knowledge from the natural sciences, social sciences, and humanities to inform policy, planning, and practice. Since its formalization as a discipline, conservation…

Digital Libraries · Computer Science 2024-04-25 Andrew K. Schulz , Adam S. Gouge , Christine L. Madliger

We present an approach of using AI to model and simulate biology and life. Why is it important? Because at the core of medicine, pharmacy, public health, longevity, agriculture and food security, environmental protection, and clean energy,…

Artificial Intelligence · Computer Science 2024-12-11 Le Song , Eran Segal , Eric Xing

Advances in molecular technologies underlie an enormous growth in the size of data sets pertaining to biology and biomedicine. These advances parallel those in the deep learning subfield of machine learning. Components in the differentiable…

Quantitative Methods · Quantitative Biology 2024-06-14 Alex Jihun Lee , Reza Abbasi-Asl

Physics-Informed Machine Learning (PIML) has successfully integrated mechanistic understanding into machine learning, particularly in domains governed by well-known physical laws. This success has motivated efforts to apply PIML to biology,…

Machine Learning · Computer Science 2025-10-30 Julien Martinelli

The engineering and design of self-organizing systems with emergent properties is a long-standing problem in the field of complex and distributed systems, for example in the engineering of self-organizing Multi-Agent Systems. The problem of…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Jochen Fromm

The physiological tradition of biological research analyzes biological systems using reduced descriptions much as an engineer uses a 'black box' description of an amplifier. Simple models have been used by physiologists for a very long…

Other Quantitative Biology · Quantitative Biology 2012-07-06 Bob Eisenberg

Quantum science and biology now intersect in three complementary directions: quantum in biology, quantum for biology, and biology for quantum. This review provides a structured narrative evidence map of that interface rather than an…

Biomedical research centers can empower basic discovery and novel therapeutic strategies by leveraging their large-scale datasets from experiments and patients. This data, together with new technologies to create and analyze it, has ushered…

Intelligence can be defined as a predominantly human ability to accomplish tasks that are generally hard for computers and animals. Artificial Intelligence [AI] is a field attempting to accomplish such tasks with computers. AI is becoming…

Artificial Intelligence · Computer Science 2019-05-03 George Cevora

Robust optimization is a young and emerging field of research having received a considerable increase of interest over the last decade. In this paper, we argue that the the algorithm engineering methodology fits very well to the field of…

Optimization and Control · Mathematics 2016-01-12 Marc Goerigk , Anita Schöbel

Bayesian optimization has become widely popular across various experimental sciences due to its favorable attributes: it can handle noisy data, perform well with relatively small datasets, and provide adaptive suggestions for sequential…

Other Quantitative Biology · Quantitative Biology 2025-08-15 Maximilian Siska , Emma Pajak , Katrin Rosenthal , Antonio del Rio Chanona , Eric von Lieres , Laura Marie Helleckes

Over the last ten years, the realm of Artificial Intelligence (AI) has experienced an explosion of revolutionary breakthroughs, transforming what seemed like a far-off dream into a reality that is now deeply embedded in our everyday lives.…

Software Engineering · Computer Science 2024-06-17 Antonio Mastropaolo , Camilo Escobar-Velásquez , Mario Linares-Vásquez

Emergence is a phenomenon taken for granted in science but also still not well understood. We have developed a model of artificial genetic evolution intended to allow for emergence on genetic, population and social levels. We present the…

Populations and Evolution · Quantitative Biology 2015-05-19 Chris Marriott , Jobran Chebib

As research and practice in artificial intelligence (A.I.) grow in leaps and bounds, the resources necessary to sustain and support their operations also grow at an increasing pace. While innovations and applications from A.I. have brought…

Artificial Intelligence · Computer Science 2023-01-30 Dan Zhao , Nathan C. Frey , Joseph McDonald , Matthew Hubbell , David Bestor , Michael Jones , Andrew Prout , Vijay Gadepally , Siddharth Samsi

Artificial Intelligence (AI) is a fast-growing research and development (R&D) discipline which is attracting increasing attention because of its promises to bring vast benefits for consumers and businesses, with considerable benefits…

Artificial Intelligence · Computer Science 2022-05-10 Zhenghua Chen , Min Wu , Alvin Chan , Xiaoli Li , Yew-Soon Ong

Biomimicry has been utilized in many branches of science and engineering to develop devices for enhanced and better performance. The application of nanotechnology has made life easier in modern times. It has offered a way to manipulate…

Applied Physics · Physics 2022-11-01 Mehedi Hasan Himel , Bejoy Sikder , Tanvir Ahmed , Sajid Muhaimin Choudhury
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