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Deformable registration has been one of the pillars of biomedical image computing. Conventional approaches refer to the definition of a similarity criterion that, once endowed with a deformation model and a smoothness constraint, determines…

Computer Vision and Pattern Recognition · Computer Science 2018-09-25 Enzo Ferrante , Puneet K. Dokania , Rafael Marini Silva , Nikos Paragios

Magnetic resonance imaging (MRI) is a cornerstone of clinical neuroimaging, yet conventional MRIs provide qualitative information heavily dependent on scanner hardware and acquisition settings. While quantitative MRI (qMRI) offers intrinsic…

Cardiac T1 mapping is a valuable quantitative MRI technique for diagnosing diffuse myocardial diseases. Traditional methods, relying on breath-hold sequences and cardiac triggering based on an ECG signal, face challenges with patient…

Image and Video Processing · Electrical Eng. & Systems 2025-03-10 Eyal Hanania , Adi Zehavi-Lenz , Ilya Volovik , Daphna Link-Sourani , Israel Cohen , Moti Freiman

There has been much recent interest in adapting undersampled trajectories in MRI based on training data. In this work, we propose a novel patient-adaptive MRI sampling algorithm based on grouping scans within a training set. Scan-adaptive…

Image and Video Processing · Electrical Eng. & Systems 2026-02-26 Siddhant Gautam , Angqi Li , Saiprasad Ravishankar

Cardiac MRI is limited by long acquisition times, which can lead to patient discomfort and motion artifacts. We aim to accelerate Cartesian dynamic cardiac MRI by learning efficient, scan-adaptive undersampling patterns that preserve…

Image and Video Processing · Electrical Eng. & Systems 2026-02-24 Siddhant Gautam , Angqi Li , Prachi P. Agarwal , Anil K. Attili , Jeffrey A. Fessler , Nicole Seiberlich , Saiprasad Ravishankar

Magnetic resonance (MR) image re-parameterization refers to the process of generating via simulations of an MR image with a new set of MRI scanning parameters. Different parameter values generate distinct contrast between different tissues,…

Image and Video Processing · Electrical Eng. & Systems 2024-04-15 Abhijeet Narang , Abhigyan Raj , Mihaela Pop , Mehran Ebrahimi

Multi-contrast MRI images provide complementary contrast information about the characteristics of anatomical structures and are commonly used in clinical practice. Recently, a multi-flip-angle (FA) and multi-echo GRE method (MULTIPLEX MRI)…

Image and Video Processing · Electrical Eng. & Systems 2021-05-19 Eric Z. Chen , Yongquan Ye , Xiao Chen , Jingyuan Lyu , Zhongqi Zhang , Yichen Hu , Terrence Chen , Jian Xu , Shanhui Sun

Diffeomorphic deformable image registration ensures smooth invertible transformations across inspiratory and expiratory chest CT scans. Yet, in practice, deep learning-based diffeomorphic methods struggle to capture large deformations…

Image and Video Processing · Electrical Eng. & Systems 2024-11-13 Muhammad F. A. Chaudhary , Stephanie M. Aguilera , Arie Nakhmani , Joseph M. Reinhardt , Surya P. Bhatt , Sandeep Bodduluri

Multimodal image registration between diffusion MRI (dMRI) and T1-weighted (T1w) MRI images is a critical step for aligning diffusion-weighted imaging (DWI) data with structural anatomical space. Traditional registration methods often…

Image and Video Processing · Electrical Eng. & Systems 2026-05-07 Xiaofan Wang , Junyi Wang , Yuqian Chen , Lauren J. O' Donnell , Fan Zhang

Multimodal image registration is a challenging but essential step for numerous image-guided procedures. Most registration algorithms rely on the computation of complex, frequently non-differentiable similarity metrics to deal with the…

Computer Vision and Pattern Recognition · Computer Science 2023-07-20 Matteo Ronchetti , Wolfgang Wein , Nassir Navab , Oliver Zettinig , Raphael Prevost

Test-time adaptation enables a trained model to adjust to a new domain during inference, making it particularly valuable in clinical settings where such on-the-fly adaptation is required. However, existing techniques depend on large target…

Computer Vision and Pattern Recognition · Computer Science 2025-07-01 Smriti Joshi , Richard Osuala , Lidia Garrucho , Kaisar Kushibar , Dimitri Kessler , Oliver Diaz , Karim Lekadir

Accurate interpretation of Magnetic Resonance Imaging scans in clinical systems is based on a precise understanding of image contrast. This contrast is primarily governed by acquisition parameters, such as echo time and repetition time,…

Computer Vision and Pattern Recognition · Computer Science 2025-08-04 Mehmet Yigit Avci , Pedro Borges , Paul Wright , Mehmet Yigitsoy , Sebastien Ourselin , Jorge Cardoso

Aggregating multi-subject functional magnetic resonance imaging (fMRI) data is indispensable for generating valid and general inferences from patterns distributed across human brains. The disparities in anatomical structures and functional…

Machine Learning · Computer Science 2019-11-20 Weida Li , Mingxia Liu , Fang Chen , Daoqiang Zhang

In clinical practice, multi-modal magnetic resonance imaging (MRI) with different contrasts is usually acquired in a single study to assess different properties of the same region of interest in the human body. The whole acquisition process…

Image and Video Processing · Electrical Eng. & Systems 2022-04-05 Kai Xuan , Lei Xiang , Xiaoqian Huang , Lichi Zhang , Shu Liao , Dinggang Shen , Qian Wang

We present a new approach for representing and reconstructing multidimensional magnetic resonance imaging (MRI) data. Our method builds on a novel, learned feature-based image representation that disentangles different types of features,…

Image and Video Processing · Electrical Eng. & Systems 2026-01-01 Ruiyang Zhao , Fan Lam

In multi-contrast magnetic resonance imaging (MRI), compressed sensing theory can accelerate imaging by sampling fewer measurements within each contrast. The conventional optimization-based models suffer several limitations: strict…

Computer Vision and Pattern Recognition · Computer Science 2019-10-02 Liyan Sun , Zhiwen Fan , Yue Huang , Xinghao Ding , John Paisley

Robust and accurate alignment of multimodal medical images is a very challenging task, which however is very useful for many clinical applications. For example, magnetic resonance (MR) and transrectal ultrasound (TRUS) image registration is…

Computer Vision and Pattern Recognition · Computer Science 2018-10-03 Pingkun Yan , Sheng Xu , Ardeshir R. Rastinehad , Brad J. Wood

MRI images of the same subject in different contrasts contain shared information, such as the anatomical structure. Utilizing the redundant information amongst the contrasts to sub-sample and faithfully reconstruct multi-contrast images…

Computer Vision and Pattern Recognition · Computer Science 2021-04-01 Xinwen Liu , Jing Wang , Fangfang Tang , Shekhar S. Chandra , Feng Liu , Stuart Crozier

Image registration is a key operation in medical image processing, allowing a plethora of applications. Mutual information (MI) is consolidated as a robust similarity metric often used for medical image registration. Although MI provides a…

Image and Video Processing · Electrical Eng. & Systems 2020-12-01 Vinicius Pavanelli Vianna , Luiz Otavio Murta

Regular mammography screening is crucial for early breast cancer detection. By leveraging deep learning-based risk models, screening intervals can be personalized, especially for high-risk individuals. While recent methods increasingly…

Computer Vision and Pattern Recognition · Computer Science 2025-11-12 Solveig Thrun , Stine Hansen , Zijun Sun , Nele Blum , Suaiba A. Salahuddin , Xin Wang , Kristoffer Wickstrøm , Elisabeth Wetzer , Robert Jenssen , Maik Stille , Michael Kampffmeyer