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Molecular interactions often involve high-order relationships that cannot be fully captured by traditional graph-based models limited to pairwise connections. Hypergraphs naturally extend graphs by enabling multi-way interactions, making…

Machine Learning · Computer Science 2025-05-12 Tien Dang , Truong-Son Hy

Graph matching pairs corresponding nodes across two or more graphs. The problem is difficult as it is hard to capture the structural similarity across graphs, especially on large graphs. We propose to incorporate high-order information for…

Artificial Intelligence · Computer Science 2020-10-12 Hui Xu , Liyao Xiang , Youmin Le , Xiaoying Gan , Yuting Jia , Luoyi Fu , Xinbing Wang

From social networks to protein complexes to disease genomes to visual data, hypergraphs are everywhere. However, the scope of research studying deep learning on hypergraphs is still quite sparse and nascent, as there has not yet existed an…

Machine Learning · Computer Science 2019-10-08 Josh Payne

This paper considers the balanced hypergraph partitioning problem, which asks for partitioning the vertices into $k$ disjoint blocks of bounded size while minimizing an objective function over the hyperedges. Here, we consider the most…

Data Structures and Algorithms · Computer Science 2021-06-17 Sebastian Schlag , Tobias Heuer , Lars Gottesbüren , Yaroslav Akhremtsev , Christian Schulz , Peter Sanders

We introduce the partition function of edge-colored graph homomorphisms, of which the usual partition function of graph homomorphisms is a specialization, and present an efficient algorithm to approximate it in a certain domain. Corollaries…

Combinatorics · Mathematics 2015-05-05 Alexander Barvinok , Pablo Soberón

A {\em connectivity function} on a set $E$ is a function $\lambda:2^E\rightarrow \mathbb R$ such that $\lambda(\emptyset)=0$, that $\lambda(X)=\lambda(E-X)$ for all $X\subseteq E$, and that $\lambda(X\cap Y)+\lambda(X\cup Y)\leq…

Combinatorics · Mathematics 2020-07-10 Nathan Bowler , Susan Jowett

Heterogeneous graphs are ubiquitous in real-world applications because they can represent various relationships between different types of entities. Therefore, learning embeddings in such graphs is a critical problem in graph machine…

Machine Learning · Computer Science 2024-04-02 Yue Zhang , Yuntian He , Saket Gurukar , Srinivasan Parthasarathy

In this paper, we consider the problem of partitioning a polygon into a set of connected disjoint sub-polygons, each of which covers an area of a specific size. The work is motivated by terrain covering applications in robotics, where the…

Computational Geometry · Computer Science 2021-10-11 Mariusz Wzorek , Cyrille Berger , Patrick Doherty

Many computational problems admit fast algorithms on special inputs, however, the required properties might be quite restrictive. E.g., many graph problems can be solved much faster on interval or cographs, or on graphs of small…

Data Structures and Algorithms · Computer Science 2022-09-30 Stefan Kratsch , Florian Nelles

The acknowledged model for networks of collaborations is the hypergraph model. Nonetheless when it comes to be visualized hypergraphs are transformed into simple graphs. Very often, the transformation is made by clique expansion of the…

Social and Information Networks · Computer Science 2017-07-04 Xavier Ouvrard , Jean-Marie Le Goff , Stéphane Marchand-Maillet

Distributed systems that manage and process graph-structured data internally solve a graph partitioning problem to minimize their communication overhead and query run-time. Besides computational complexity -- optimal graph partitioning is…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-03-24 Ruben Mayer , Hans-Arno Jacobsen

We study a class of graph Hamiltonians given by a type of quiver representation to which we can associate (non)--commutative geometries. By selecting gauging data these geometries are realized by matrices through an explicit construction or…

Mathematical Physics · Physics 2017-06-02 Ralph M. Kaufmann , Sergei Khlebnikov , Birgit Wehefritz-Kaufmann

A directed acyclic hypergraph is a generalized concept of a directed acyclic graph, where each hyperedge can contain an arbitrary number of tails and heads. Directed hypergraphs can be used to model data flow and execution dependencies in…

Data Structures and Algorithms · Computer Science 2020-10-16 Merten Popp , Sebastian Schlag , Christian Schulz , Daniel Seemaier

Hypergraphs naturally represent group interactions, which are omnipresent in many domains: collaborations of researchers, co-purchases of items, and joint interactions of proteins, to name a few. In this work, we propose tools for answering…

Social and Information Networks · Computer Science 2023-10-25 Geon Lee , Seokbum Yoon , Jihoon Ko , Hyunju Kim , Kijung Shin

We introduce ideas that complement the many known connections between polymatroids and graph coloring. Given a hypergraph that satisfies certain conditions, we construct polymatroids, given as rank functions, that can be written as sums of…

Combinatorics · Mathematics 2024-08-07 Joseph E. Bonin , Carolyn Chun

Testing a graph on 2-vertex- and 2-edge-connectivity are two fundamental algorithmic graph problems. For both problems, different linear-time algorithms with simple implementations are known. Here, an even simpler linear-time algorithm is…

Data Structures and Algorithms · Computer Science 2012-09-05 Jens M. Schmidt

We consider a random geometric hypergraph model based on an underlying bipartite graph. Nodes and hyperedges are sampled uniformly in a domain, and a node is assigned to those hyperedges that lie with a certain radius. From a modelling…

Probability · Mathematics 2023-09-19 Henry-Louis de Kergorlay , Desmond J. Higham

We present a concept called the branch-depth of a connectivity function, that generalizes the tree-depth of graphs. Then we prove two theorems showing that this concept aligns closely with the notions of tree-depth and shrub-depth of graphs…

Combinatorics · Mathematics 2020-11-05 Matt DeVos , O-joung Kwon , Sang-il Oum

We develop a multilevel algorithm for hypergraph partitioning that contracts the vertices one at a time. Using several caching and lazy-evaluation techniques during coarsening and refinement, we reduce the running time by up to two-orders…

Data Structures and Algorithms · Computer Science 2015-11-11 Sebastian Schlag , Vitali Henne , Tobias Heuer , Henning Meyerhenke , Peter Sanders , Christian Schulz

Many problems such as node classification and link prediction in network data can be solved using graph embeddings. However, it is difficult to use graphs to capture non-binary relations such as communities of nodes. These kinds of complex…

Social and Information Networks · Computer Science 2022-01-27 Sepideh Maleki , Donya Saless , Dennis P. Wall , Keshav Pingali
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