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We present a thermodynamically consistent energetic variational model for active nematics driven by ATP hydrolysis, with a focus on the coupling between chemical reactions and mechanical dynamics. Extending the classical Toner-Tu framework,…

Soft Condensed Matter · Physics 2025-07-01 Yiwei Wang

A Self Consistent Field Theory description of equilibrium, but non uniform, configurations adopted by semi flexible liquid crystal molecules is presented. Two cases are considered, isotropic-nematic phase boundaries, and topological defects…

Soft Condensed Matter · Physics 2025-03-03 Longyu Qing , Jorge Viñals

Recent experiments have shown that the nematode {\it T. aceti} can assemble into collectively undulating groups at the edge of fluid drops. This coordinated state consists of metachronal waves and drives fluid circulation inside the drop.…

Local symmetry transformations play an important role for establishing the existence and form of a conserved (Noether) current in systems with a global continuous symmetry. We explain how this fact leads to the existence of linear relations…

High Energy Physics - Theory · Physics 2020-02-07 Tomas Brauner

Non-smooth vector fields does not have necessarily the property of uniqueness of solution passing through a point and this is responsible to enrich the behavior of the system. Even on the plane non-smooth vector fields can be chaotic, a…

Dynamical Systems · Mathematics 2021-12-07 Andre Amaral Antunes , Tiago Carvalho , Regis Varao

We investigate similarities in the micro-structural dynamics between externally driven and actively driven nematics. Walls, lines of strong deformations in the director field, and topological defects are characteristic features of an active…

Soft Condensed Matter · Physics 2015-04-28 Sumesh P. Thampi , Ramin Golestanian , Julia M. Yeomans

The interplay between active matter and its environment is central to understanding emergent behavior in biological and synthetic systems. Here, we show that coupling active nematic flows to small-amplitude deformations of a compliant…

Soft Condensed Matter · Physics 2026-01-19 Varun Venkatesh , Amin Doostmohammadi

The problem of low Reynolds number turbulence in active nematic fluids is theoretically addressed. Using numerical simulations I demonstrate that an incompressible turbulent flow, in two-dimensional active nematics, consists of an ensemble…

Soft Condensed Matter · Physics 2015-08-04 Luca Giomi

We derive the hydrodynamic equations for nematic liquid crystals lying on curved substrates. We invoke the Lagrange-Rayleigh variational principle to adapt the Ericksen-Leslie theory to two-dimensional nematics in which a degenerate…

Soft Condensed Matter · Physics 2016-08-24 Gaetano Napoli , Luigi Vergori

Simulating transition dynamics between metastable states is a fundamental challenge in dynamical systems and stochastic processes with wide real-world applications in understanding protein folding, chemical reactions and neural activities.…

Machine Learning · Computer Science 2024-10-22 Haibo Wang , Yuxuan Qiu , Yanze Wang , Rob Brekelmans , Yuanqi Du

A self-interacting polymer can undergo an orientational ordering transition, depending on the magnitude of the nematic interaction. The effect of embedding such a polymer into a flexible surface on this transition is studied on the…

Condensed Matter · Physics 2009-10-28 Rudolf Podgornik

A consistent description of a shear flow, the accompanied viscous heating, and the associated entropy balance is given in the framework of a deterministic dynamical system, where a multibaker dynamics drives two fields: the velocity and the…

Chaotic Dynamics · Physics 2009-10-31 Tamas Tel , Juergen Vollmer , Laszlo Matyas

Active processes drive and guide biological dynamics across scales -- from subcellular cytoskeletal remodelling, through tissue development in embryogenesis, to population-level bacterial colonies expansion. In each of these, biological…

Numerous biological and physical processes can be modeled as systems of interacting entities evolving continuously over time, e.g. the dynamics of communicating cells or physical particles. Learning the dynamics of such systems is essential…

Active nematics are dense systems of rodlike particles that consume energy to drive motion at the level of the individual particles. They exist in natural systems like biological tissues and artificial materials such as suspensions of…

Soft Condensed Matter · Physics 2023-12-14 Yunrui Li , Zahra Zarei , Phu N. Tran , Yifei Wang , Aparna Baskaran , Seth Fraden , Michael F. Hagan , Pengyu Hong

In turbulent flows, energy flux refers to the transfer of kinetic energy across different scales of motion, a concept that is a cornerstone of turbulence theory. The direction of net energy flux is prescribed by the dimensionality of the…

Fluid Dynamics · Physics 2024-11-26 Xinyu Si , Filippo De Lillo , Guido Boffetta , Lei Fang

The past few years have seen many advances in our understanding of the dynamics of polymeric fluids. These include improvements on the successful reptation theory; an emerging molecular theory of semiflexible chain dynamics; and an…

Soft Condensed Matter · Physics 2007-05-23 Peter D. Olmsted

We propose a thermodynamically consistent phase-field model for the flow of a mixture of two different viscous incompressible fluids of equal density in a bounded domain. We prove the well-posedness of local-in-time strong solutions by…

Analysis of PDEs · Mathematics 2025-11-18 Helmut Abels , Alice Marveggio , Andrea Poiatti

Liquid crystals establish a nearly unique combination of thermodynamic, hydrodynamic, and topological behavior. This poses a challenge to their theoretical understanding and modeling. The arena where these effects come together is the…

Soft Condensed Matter · Physics 2019-07-03 Shubhadeep Mandal , Marco G. Mazza

Incorporating the inherent heterogeneity of living systems into models of active nematics is essential to provide a more realistic description of biological processes such as bacterial growth, cell dynamics and tissue development.…

Soft Condensed Matter · Physics 2024-11-06 Alexander J. H. Houston , Nigel J. Mottram