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Sparse autoencoders (SAEs) have been widely used for interpretability of neural networks, but their learned features often vary across seeds and hyperparameter settings. We introduce Ordered Sparse Autoencoders (OSAE), which extend…

Machine Learning · Computer Science 2025-12-03 Sophie L. Wang , Alex Quach , Nithin Parsan , John J. Yang

There is growing interest in leveraging mechanistic interpretability and controllability to better understand and influence the internal dynamics of large language models (LLMs). However, current methods face fundamental challenges in…

Computation and Language · Computer Science 2025-12-02 Ruben Härle , Felix Friedrich , Manuel Brack , Stephan Wäldchen , Björn Deiseroth , Patrick Schramowski , Kristian Kersting

We present a probabilistic autoencoder (PAE) framework for galaxy spectral energy distribution (SED) modeling and redshift estimation, applied to synthetic SPHEREx 102-band spectrophotometry. Our PAE learns a compact latent representation…

Instrumentation and Methods for Astrophysics · Physics 2026-03-27 Richard M. Feder , Liam Parker , Uroš Seljak

It is assumed that sparse autoencoders (SAEs) decompose polysemantic activations into interpretable linear directions, as long as the activations are composed of sparse linear combinations of underlying features. However, we find that if an…

Machine Learning · Computer Science 2025-09-29 David Chanin , Tomáš Dulka , Adrià Garriga-Alonso

Sparse autoencoders (SAEs) and transcoders have become important tools for machine learning interpretability. However, measuring how interpretable they are remains challenging, with weak consensus about which benchmarks to use. Most…

Machine Learning · Computer Science 2025-07-14 Gonçalo Paulo , Nora Belrose

Ongoing and future photometric surveys will produce unprecedented volumes of galaxy images, necessitating robust, efficient methods for deriving galaxy morphological parameters at scale. Traditional approaches, such as parametric…

Instrumentation and Methods for Astrophysics · Physics 2025-12-30 Keen Leung , Colen Yan , Jun Yin

Sparse autoencoders (SAEs) improve interpretability in multimodal models, but it remains unclear whether SAE features form modular, composable units for reasoning-an assumption underlying many intervention-based steering methods. We test…

Artificial Intelligence · Computer Science 2026-03-27 Yunpeng Zhou

The Linear Representation Hypothesis asserts that the embeddings learned by neural networks can be understood as linear combinations of features corresponding to high-level concepts. Based on this ansatz, sparse autoencoders (SAEs) have…

Machine Learning · Computer Science 2026-01-29 Chiraag Kaushik , Davis Barch , Andrea Fanelli

Sparse autoencoders (SAEs) are increasingly used for safety-relevant applications including alignment detection and model steering. These use cases require SAE latents to be as atomic as possible. Each latent should represent a single…

Machine Learning · Computer Science 2026-04-07 Matthew Levinson

Sparse Autoencoders (SAEs) have emerged as a promising solution for decomposing large language model representations into interpretable features. However, Paulo and Belrose (2025) have highlighted instability across different initialization…

Machine Learning · Computer Science 2025-06-24 Seonglae Cho , Harryn Oh , Donghyun Lee , Luis Eduardo Rodrigues Vieira , Andrew Bermingham , Ziad El Sayed

Sparse autoencoders (SAEs) model the activations of a neural network as linear combinations of sparsely occurring directions of variation (latents). The ability of SAEs to reconstruct activations follows scaling laws w.r.t. the number of…

Machine Learning · Computer Science 2025-09-05 Eric J. Michaud , Liv Gorton , Tom McGrath

Sparse Autoencoders (SAEs) are a prominent tool in mechanistic interpretability (MI) for decomposing neural network activations into interpretable features. However, the aspiration to identify a canonical set of features is challenged by…

Machine Learning · Computer Science 2025-05-27 Xiangchen Song , Aashiq Muhamed , Yujia Zheng , Lingjing Kong , Zeyu Tang , Mona T. Diab , Virginia Smith , Kun Zhang

Brain MRI foundation models learn rich representations of anatomy, but interpreting what clinical information they encode remains an open problem. Standard sparse autoencoders (SAEs) suffer from severe feature collapse in deep transformer…

Computer Vision and Pattern Recognition · Computer Science 2026-05-05 Favour Nerrise , Lucy Yin , Mohammad H. Abbasi , Kilian M. Pohl , Ehsan Adeli

Adapting foundation models for specific purposes has become a standard approach to build machine learning systems for downstream applications. Yet, it is an open question which mechanisms take place during adaptation. Here we develop a new…

Computer Vision and Pattern Recognition · Computer Science 2025-03-24 Hyesu Lim , Jinho Choi , Jaegul Choo , Steffen Schneider

Sparse Autoencoders (SAEs) have emerged as a useful tool for interpreting the internal representations of neural networks. However, naively optimising SAEs for reconstruction loss and sparsity results in a preference for SAEs that are…

Machine Learning · Computer Science 2024-10-16 Kola Ayonrinde , Michael T. Pearce , Lee Sharkey

Sparse dictionary learning (and, in particular, sparse autoencoders) attempts to learn a set of human-understandable concepts that can explain variation on an abstract space. A basic limitation of this approach is that it neither exploits…

Computation and Language · Computer Science 2025-06-03 Mark Muchane , Sean Richardson , Kiho Park , Victor Veitch

Learning hierarchical features in Sparse Autoencoders (SAEs) is essential for capturing the structured nature of real-world data and mitigating issues like feature absorption or splitting. Existing works attempt to identify hierarchical…

Machine Learning · Computer Science 2026-05-12 Tue M. Cao , Hoang X. Nhat , Raed Alharbi , Phi Le Nguyen , My T. Thai

We present the first systematic study of Sparse Autoencoders (SAEs) on video representations. Standard SAEs decompose video into interpretable, monosemantic features but destroy temporal coherence: hard TopK selection produces unstable…

Computer Vision and Pattern Recognition · Computer Science 2026-04-07 Atahan Dokme , Sriram Vishwanath

A key barrier to interpreting large language models is polysemanticity, where neurons activate for multiple unrelated concepts. Sparse autoencoders (SAEs) have been proposed to mitigate this issue by transforming dense activations into…

Machine Learning · Computer Science 2025-10-20 Moghis Fereidouni , Muhammad Umair Haider , Peizhong Ju , A. B. Siddique

Artificial intelligence in healthcare requires models that are accurate and interpretable. We advance mechanistic interpretability in medical vision by applying Medical Sparse Autoencoders (MedSAEs) to the latent space of MedCLIP, a…

Artificial Intelligence · Computer Science 2026-05-25 Riccardo Renzulli , Colas Lepoutre , Enrico Cassano , Marco Grangetto
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