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Molecular dynamics (MD) simulations play a crucial role in resolving the underlying conformational dynamics of molecular systems. However, their capability to correctly reproduce and predict dynamics in agreement with experiments is limited…

Chemical Physics · Physics 2025-05-19 Ivan Gilardoni , Valerio Piomponi , Thorben Fröhlking , Giovanni Bussi

We present an open-source simulation framework for optically detected magnetic resonance, developed in Python. The framework allows users to construct, manipulate, and evolve multipartite quantum systems that consist of spins and electronic…

Quantum Physics · Physics 2025-01-13 Laura A. Völker , John M. Abendroth , Christian L. Degen , Konstantin Herb

PyPOTS is an open-source Python library dedicated to data mining and analysis on multivariate partially-observed time series with missing values. Particularly, it provides easy access to diverse algorithms categorized into five tasks:…

Machine Learning · Computer Science 2025-07-10 Wenjie Du , Yiyuan Yang , Linglong Qian , Jun Wang , Qingsong Wen

Tracers provide users with useful information about program executions. In this article, we propose a ``tracer driver''. From a single tracer, it provides a powerful front-end enabling multiple dynamic analysis tools to be easily…

Software Engineering · Computer Science 2008-12-18 Ludovic Langevine , Mireille Ducasse

In this paper, we present pyspect, a Python toolbox that simplifies the use of reachability analysis for temporal logic problems. Currently, satisfying complex requirements in cyber-physical systems requires significant manual effort and…

Systems and Control · Electrical Eng. & Systems 2025-10-14 Kaj Munhoz Arfvidsson , Loizos Hadjiloizou , Frank J. Jiang , Karl H. Johansson , Jonas Mårtensson

Summary: The DynaSig-ML (Dynamical Signatures - Machine Learning) Python package allows the efficient, user-friendly exploration of 3D dynamics-function relationships in biomolecules, using datasets of experimental measures from large…

Biomolecules · Quantitative Biology 2022-07-08 Olivier Mailhot , Francois Major , Rafael Najmanovich

Point tracking aims to follow visual points through complex motion, occlusion, and viewpoint changes, and has advanced rapidly with modern foundation models. Yet progress toward general point tracking remains constrained by limited…

Computer Vision and Pattern Recognition · Computer Science 2026-02-05 Weiguang Zhao , Haoran Xu , Xingyu Miao , Qin Zhao , Rui Zhang , Kaizhu Huang , Ning Gao , Peizhou Cao , Mingze Sun , Mulin Yu , Tao Lu , Linning Xu , Junting Dong , Jiangmiao Pang

Biological neural networks are often modeled as systems of coupled, nonlinear, ordinary or partial differential equations. The number of differential equations used to model a network increases with the size of the network and the level of…

Neurons and Cognition · Quantitative Biology 2022-08-09 Rishika Mohanta , Collins Assisi

The analysis of experimental results with Python often requires writing many code scripts which all need access to the same set of functions. In a common field of research, this set will be nearly the same for many users. The qspec Python…

Computational Physics · Physics 2025-03-18 Patrick Müller , Wilfried Nörtershäuser

The current landscape of scientific research is widely based on modeling and simulation, typically with complexity in the simulation's flow of execution and parameterization properties. Execution flows are not necessarily straightforward…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-07-26 Eduardo Ponce , Brittany Stephenson , Suzanne Lenhart , Judy Day , Gregory D. Peterson

Achieving fully autonomous driving systems requires learning rational decisions in a wide span of scenarios, including safety-critical and out-of-distribution ones. However, such cases are underrepresented in real-world corpus collected by…

Computer Vision and Pattern Recognition · Computer Science 2026-04-13 Haochen Tian , Tianyu Li , Haochen Liu , Jiazhi Yang , Yihang Qiu , Guang Li , Junli Wang , Yinfeng Gao , Zhang Zhang , Liang Wang , Hangjun Ye , Tieniu Tan , Long Chen , Hongyang Li

Interactive line chart visualizations greatly enhance the effective exploration of large time series. Although downsampling has emerged as a well-established approach to enable efficient interactive visualization of large datasets, it is…

Signal Processing · Electrical Eng. & Systems 2023-07-12 Jeroen Van Der Donckt , Jonas Van Der Donckt , Sofie Van Hoecke

As autonomous driving technology matures, safety and robustness of its key components, including trajectory prediction, is vital. Though real-world datasets, such as Waymo Open Motion, provide realistic recorded scenarios for model…

Robotics · Computer Science 2024-02-06 Benjamin Stoler , Ingrid Navarro , Meghdeep Jana , Soonmin Hwang , Jonathan Francis , Jean Oh

Accurate trajectory prediction is a cornerstone for the safe operation of autonomous driving systems, where understanding the dynamic behavior of surrounding agents is crucial. Transformer-based architectures have demonstrated significant…

Machine Learning · Computer Science 2025-05-07 JianLin Zhu , HongKuo Niu

Eye-tracking datasets are often shared in the format used by their creators for their original analyses, usually resulting in the exclusion of data considered irrelevant to the primary purpose. In order to increase re-usability of existing…

Computation and Language · Computer Science 2024-06-13 Deborah N. Jakobi , Daniel G. Krakowczyk , Lena A. Jäger

The increasing availability of high-quality optical and near-infrared spectroscopic data, as well as advances in modelling techniques, have greatly expanded the scientific potential of spectroscopic studies. However, the software tools…

Instrumentation and Methods for Astrophysics · Physics 2025-12-23 Daniele Gasparri , Lorenzo Morelli , Umberto Battino , Jairo Méndez Abreu , Adriana de Lorenzo-Cáceres

The driving interaction-a critical yet complex aspect of daily driving-lies at the core of autonomous driving research. However, real-world driving scenarios sparsely capture rich interaction events, limiting the availability of…

Robotics · Computer Science 2024-12-03 Xiyan Jiang , Xiaocong Zhao , Yiru Liu , Zirui Li , Peng Hang , Lu Xiong , Jian Sun

Trajectory analysis is essential in many applications. In this paper, we address the problem of representing motion trajectories in a highly informative way, and consequently utilize it for analyzing trajectories. Our approach first…

Computer Vision and Pattern Recognition · Computer Science 2017-04-27 Weiyao Lin , Yang Zhou , Hongteng Xu , Junchi Yan , Mingliang Xu , Jianxin Wu , Zicheng Liu

Due to the advent of new mobile devices and tracking sensors in recent years, huge amounts of data are being produced every day. Therefore, novel methodologies need to emerge that dive through this vast sea of information and generate…

Computer Vision and Pattern Recognition · Computer Science 2022-05-31 Ioannis Kontopoulos , Antonios Makris , Konstantinos Tserpes , Vania Bogorny

This paper addresses the problem of generating dynamically admissible trajectories for control tasks using diffusion models, particularly in scenarios where the environment is complex and system dynamics are crucial for practical…

Robotics · Computer Science 2025-10-15 Darshan Gadginmath , Fabio Pasqualetti