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Heterogeneity is a key aspect of complex networks, often emerging by looking at the distribution of node properties, from the milestone observations on the degree to the recent developments in mixing pattern estimation. Mixing patterns, in…

Social and Information Networks · Computer Science 2021-12-01 Salvatore Citraro , Letizia Milli , Rémy Cazabet , Giulio Rossetti

Graph Neural Networks (GNNs) excel in node classification tasks but often assume homophily, where connected nodes share similar labels. This assumption does not hold in many real-world heterophilic graphs. Existing models for heterophilic…

Machine Learning · Computer Science 2025-10-10 Yumeng Wang , Zengyi Wo , Wenjun Wang , Xingcheng Fu , Minglai Shao

Graph Neural Networks (GNNs) have been broadly applied in many urban applications upon formulating a city as an urban graph whose nodes are urban objects like regions or points of interest. Recently, a few enhanced GNN architectures have…

Machine Learning · Computer Science 2023-06-22 Congxi Xiao , Jingbo Zhou , Jizhou Huang , Tong Xu , Hui Xiong

Homophily -- the tendency of individuals to interact with similar others -- shapes how networks form and function. Yet existing approaches typically collapse homophily to a single scale, either one parameter for the whole network or one per…

Physics and Society · Physics 2025-12-16 Abbas K. Rizi , Riccardo Michielan , Clara Stegehuis , Mikko Kivelä

Despite the celebrated popularity of Graph Neural Networks (GNNs) across numerous applications, the ability of GNNs to generalize remains less explored. In this work, we propose to study the generalization of GNNs through a novel…

Machine Learning · Computer Science 2024-04-17 Shouheng Li , Dongwoo Kim , Qing Wang

Graph structure learning aims to learn connectivity in a graph from data. It is particularly important for many computer vision related tasks since no explicit graph structure is available for images for most cases. A natural way to…

Computer Vision and Pattern Recognition · Computer Science 2022-12-26 Yaohua Wang , FangYi Zhang , Ming Lin , Senzhang Wang , Xiuyu Sun , Rong Jin

Graph Neural Networks (GNNs) have achieved great success on a node classification task. Despite the broad interest in developing and evaluating GNNs, they have been assessed with limited benchmark datasets. As a result, the existing…

Machine Learning · Computer Science 2022-12-29 Seiji Maekawa , Koki Noda , Yuya Sasaki , Makoto Onizuka

Recently, neighbor-based contrastive learning has been introduced to effectively exploit neighborhood information for clustering. However, these methods rely on the homophily assumption-that connected nodes share similar class labels and…

Social and Information Networks · Computer Science 2025-12-23 Liang Peng , Yixuan Ye , Cheng Liu , Hangjun Che , Man-Fai Leung , Si Wu , Hau-San Wong

Graph neural networks (GNNs) have demonstrated success in modeling relational data primarily under the assumption of homophily. However, many real-world graphs exhibit heterophily, where linked nodes belong to different categories or…

Computation and Language · Computer Science 2025-03-10 Shujie Li , Yuxia Wu , Chuan Shi , Yuan Fang

Real-world graphs are typically complex, exhibiting heterogeneity in the global structure, as well as strong heterophily within local neighborhoods. While a growing body of literature has revealed the limitations of common graph neural…

Machine Learning · Computer Science 2023-10-19 Jintang Li , Zheng Wei , Jiawang Dan , Jing Zhou , Yuchang Zhu , Ruofan Wu , Baokun Wang , Zhang Zhen , Changhua Meng , Hong Jin , Zibin Zheng , Liang Chen

In online social networks, it is common to use predictions of node categories to estimate measures of homophily and other relational properties. However, online social network data often lacks basic demographic information about the nodes.…

Social and Information Networks · Computer Science 2020-01-31 George Berry , Antonio Sirianni , Ingmar Weber , Jisun An , Michael Macy

Recent years have witnessed the emerging success of graph neural networks (GNNs) for modeling structured data. However, most GNNs are designed for homogeneous graphs, in which all nodes and edges belong to the same types, making them…

Machine Learning · Computer Science 2020-03-04 Ziniu Hu , Yuxiao Dong , Kuansan Wang , Yizhou Sun

Graph neural networks (GNNs) often struggle to learn discriminative node representations for heterophilic graphs, where connected nodes tend to have dissimilar labels and feature similarity provides weak structural cues. We propose…

Machine Learning · Computer Science 2025-12-30 Ayushman Raghuvanshi , Gonzalo Mateos , Sundeep Prabhakar Chepuri

While heterophily has been widely studied in node-level tasks, its impact on graph-level tasks remains unclear. We present the first analysis of heterophily in graph-level learning, combining theoretical insights with empirical validation.…

Machine Learning · Computer Science 2025-09-24 Qinhan Hou , Yilun Zheng , Xichun Zhang , Sitao Luan , Jing Tang

Real-world networks usually have a property of node heterophily, that is, the connected nodes usually have different features or different labels. This heterophily issue has been extensively studied in homogeneous graphs but remains…

Social and Information Networks · Computer Science 2025-06-27 Ziyu Zheng , Yaming Yang , Ziyu Guan , Wei Zhao , Weigang Lu

Graph Neural Networks (GNNs) have emerged as a powerful framework for processing graph-structured data. However, conventional GNNs and their variants are inherently limited by the homophily assumption, leading to degradation in performance…

Machine Learning · Computer Science 2026-03-05 Jiaqi Lv , Qingfeng Du , Yu Zhang , Yongqi Han , Sheng Li

Deep neural networks (DNNs) have been shown to memorize their training data, yet similar analyses for graph neural networks (GNNs) remain largely under-explored. We introduce NCMemo (Node Classification Memorization), the first framework to…

Machine Learning · Computer Science 2025-09-04 Adarsh Jamadandi , Jing Xu , Adam Dziedzic , Franziska Boenisch

Graph neural networks (GNNs) have achieved remarkable success in relational learning. However, their vulnerability to graph backdoor attacks (GBAs) poses a significant barrier to broader adoption in high-stakes applications. Despite recent…

Cryptography and Security · Computer Science 2026-05-26 Mengting Pan , Fan Li , Chen Chen , Xiaoyang Wang

Foundation models pretrained on large data have demonstrated remarkable zero-shot generalization capabilities across domains. Building on the success of TabPFN for tabular data and its recent extension to time series, we investigate whether…

Machine Learning · Computer Science 2025-12-10 Jeongwhan Choi , Woosung Kang , Minseo Kim , Jongwoo Kim , Noseong Park

Despite much research, Graph Neural Networks (GNNs) still do not display the favorable scaling properties of other deep neural networks such as Convolutional Neural Networks and Transformers. Previous work has identified issues such as…

Machine Learning · Computer Science 2023-12-19 Ameen Ali , Hakan Cevikalp , Lior Wolf