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Related papers: Supervised Fine-Tuning or In-Context Learning? Eva…

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When using supervised fine-tuning (SFT) to adapt large language models (LLMs) to specific domains, a significant challenge arises: should we use the entire SFT dataset for fine-tuning? Common practice often involves fine-tuning directly on…

Computation and Language · Computer Science 2025-05-26 Xiang Liu , Zhaoxiang Liu , Peng Wang , Kohou Wang , Huan Hu , Kai Wang , Shiguo Lian

Named Entity Recognition (NER) in biomedical domains faces challenges due to data scarcity and imbalanced label distributions, especially with fine-grained entity types. We propose ReProCon, a novel few-shot NER framework that combines…

Computation and Language · Computer Science 2025-08-26 Jeongkyun Yoo , Nela Riddle , Andrew Hoblitzell

Recognizing entities in texts is a central need in many information-seeking scenarios, and indeed, Named Entity Recognition (NER) is arguably one of the most successful examples of a widely adopted NLP task and corresponding NLP technology.…

Computation and Language · Computer Science 2023-10-24 Uri Katz , Matan Vetzler , Amir DN Cohen , Yoav Goldberg

Foundational Language Models (FLMs) have advanced natural language processing (NLP) research. Current researchers are developing larger FLMs (e.g., XLNet, T5) to enable contextualized language representation, classification, and generation.…

Computation and Language · Computer Science 2023-08-24 Nancy Tyagi , Aidin Shiri , Surjodeep Sarkar , Abhishek Kumar Umrawal , Manas Gaur

Large Language Models (LLMs) have demonstrated impressive capabilities for generalizing in unseen tasks. In the Named Entity Recognition (NER) task, recent advancements have seen the remarkable improvement of LLMs in a broad range of entity…

Computation and Language · Computer Science 2024-06-21 Yuyang Ding , Juntao Li , Pinzheng Wang , Zecheng Tang , Bowen Yan , Min Zhang

Large Transformer-based language models such as BERT have led to broad performance improvements on many NLP tasks. Domain-specific variants of these models have demonstrated excellent performance on a variety of specialised tasks. In legal…

Computation and Language · Computer Science 2021-09-16 Benjamin Clavié , Akshita Gheewala , Paul Briton , Marc Alphonsus , Rym Laabiyad , Francesco Piccoli

Recently, there is an effort to extend fine-grained entity typing by using a richer and ultra-fine set of types, and labeling noun phrases including pronouns and nominal nouns instead of just named entity mentions. A key challenge for this…

Computation and Language · Computer Science 2021-06-09 Hongliang Dai , Yangqiu Song , Haixun Wang

In-context learning (ICL) with large language models (LLMs) has emerged as a promising paradigm for named entity recognition (NER) in low-resource scenarios. However, existing ICL-based NER methods suffer from three key limitations: (1)…

Computation and Language · Computer Science 2025-11-25 Wenxuan Mu , Jinzhong Ning , Di Zhao , Yijia Zhang

Computational phenotyping is a central informatics activity with resulting cohorts supporting a wide variety of applications. However, it is time-intensive because of manual data review and limited automation. Since LLMs have demonstrated…

Quantitative Methods · Quantitative Biology 2025-08-18 Sarah Pungitore , Shashank Yadav , Molly Douglas , Jarrod Mosier , Vignesh Subbian

Backgrounds: Information extraction (IE) is critical in clinical natural language processing (NLP). While large language models (LLMs) excel on generative tasks, their performance on extractive tasks remains debated. Methods: We…

For large-scale IT corpora with hundreds of classes organized in a hierarchy, the task of accurate classification of classes at the higher level in the hierarchies is crucial to avoid errors propagating to the lower levels. In the business…

Computation and Language · Computer Science 2023-08-25 Yasmen Wahba , Nazim Madhavji , John Steinbacher

Multi-task learning (MTL) has achieved remarkable success in natural language processing applications. In this work, we study a multi-task learning model with multiple decoders on varieties of biomedical and clinical natural language…

Computation and Language · Computer Science 2020-05-07 Yifan Peng , Qingyu Chen , Zhiyong Lu

Recent developments in Named Entity Recognition (NER) have resulted in better and better models. However, is there a glass ceiling? Do we know which types of errors are still hard or even impossible to correct? In this paper, we present a…

Computation and Language · Computer Science 2022-11-28 Tomasz Stanislawek , Anna Wróblewska , Alicja Wójcicka , Daniel Ziembicki , Przemyslaw Biecek

We investigate the effectiveness of fine-tuning large language models (LLMs) on small medical datasets for text classification and named entity recognition tasks. Using a German cardiology report dataset and the i2b2 Smoking Challenge…

Computation and Language · Computer Science 2025-03-28 Noah Losch , Lucas Plagwitz , Antonius Büscher , Julian Varghese

Contextualized word embeddings derived from pre-trained language models (LMs) show significant improvements on downstream NLP tasks. Pre-training on domain-specific corpora, such as biomedical articles, further improves their performance.…

Computation and Language · Computer Science 2019-04-05 Qiao Jin , Bhuwan Dhingra , William W. Cohen , Xinghua Lu

The recent success of Large Language Models (LLMs) has gained significant attention in both academia and industry. Substantial efforts have been made to enhance the zero- and few-shot generalization capabilities of open-source LLMs through…

Computation and Language · Computer Science 2023-10-03 Zongxi Li , Xianming Li , Yuzhang Liu , Haoran Xie , Jing Li , Fu-lee Wang , Qing Li , Xiaoqin Zhong

The task of Named Entity Recognition (NER) is an important component of many natural language processing systems, such as relation extraction and knowledge graph construction. In this work, we present a simple and effective approach for…

Computation and Language · Computer Science 2022-03-29 Urchade Zaratiana , Pierre Holat , Nadi Tomeh , Thierry Charnois

Large language models (LLMs) have demonstrated dominating performance in many NLP tasks, especially on generative tasks. However, they often fall short in some information extraction tasks, particularly those requiring domain-specific…

Computation and Language · Computer Science 2023-09-22 Junyi Bian , Jiaxuan Zheng , Yuyi Zhang , Shanfeng Zhu

Encoder-based transformer models are central to biomedical and clinical Natural Language Processing (NLP), as their bidirectional self-attention makes them well-suited for efficiently extracting structured information from unstructured text…

The use of BERT, one of the most popular language models, has led to improvements in many Natural Language Processing (NLP) tasks. One such task is Named Entity Recognition (NER) i.e. automatic identification of named entities such as…

Computation and Language · Computer Science 2023-03-10 Harshil Darji , Jelena Mitrović , Michael Granitzer