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Atomic norm minimization is of great interest in various applications of sparse signal processing including super-resolution line-spectral estimation and signal denoising. In practice, atomic norm minimization (ANM) is formulated as…

Signal Processing · Electrical Eng. & Systems 2024-10-29 Ruifu Li , Danijela Cabric

Deep neural networks (DNNs) have achieved remarkable success across diverse domains, but their performance can be severely degraded by noisy or corrupted training data. Conventional noise mitigation methods often rely on explicit…

Machine Learning · Computer Science 2025-06-16 Deliang Jin , Gang Chen , Shuo Feng , Yufeng Ling , Haoran Zhu

Molecule pretraining has quickly become the go-to schema to boost the performance of AI-based drug discovery. Naturally, molecules can be represented as 2D topological graphs or 3D geometric point clouds. Although most existing pertaining…

Machine Learning · Computer Science 2025-02-10 Shengchao Liu , Weitao Du , Zhiming Ma , Hongyu Guo , Jian Tang

Inverse protein folding generates valid amino acid sequences that can fold into a desired protein structure, with recent deep-learning advances showing strong potential and competitive performance. However, challenges remain, such as…

Biomolecules · Quantitative Biology 2025-07-29 Peizhen Bai , Filip Miljković , Xianyuan Liu , Leonardo De Maria , Rebecca Croasdale-Wood , Owen Rackham , Haiping Lu

Molecular representation learning has attracted much attention recently. A molecule can be viewed as a 2D graph with nodes/atoms connected by edges/bonds, and can also be represented by a 3D conformation with 3-dimensional coordinates of…

Machine Learning · Computer Science 2022-07-20 Jinhua Zhu , Yingce Xia , Lijun Wu , Shufang Xie , Tao Qin , Wengang Zhou , Houqiang Li , Tie-Yan Liu

Understanding the behavior of stochastic gradient descent (SGD) in the context of deep neural networks has raised lots of concerns recently. Along this line, we study a general form of gradient based optimization dynamics with unbiased…

Machine Learning · Statistics 2019-06-11 Zhanxing Zhu , Jingfeng Wu , Bing Yu , Lei Wu , Jinwen Ma

With the recent advances in machine learning for quantum chemistry, it is now possible to predict the chemical properties of compounds and to generate novel molecules. Existing generative models mostly use a string- or graph-based…

Biomolecules · Quantitative Biology 2020-10-14 Vitali Nesterov , Mario Wieser , Volker Roth

Recently, tremendous human-designed and automatically searched neural networks have been applied to image denoising. However, previous works intend to handle all noisy images in a pre-defined static network architecture, which inevitably…

Computer Vision and Pattern Recognition · Computer Science 2021-10-19 Zutao Jiang , Changlin Li , Xiaojun Chang , Jihua Zhu , Yi Yang

Molecular representation learning has shown great success in advancing AI-based drug discovery. The core of many recent works is based on the fact that the 3D geometric structure of molecules provides essential information about their…

Machine Learning · Computer Science 2024-10-23 Jiying Zhang , Zijing Liu , Yu Wang , Yu Li

We study compressed sensing (CS) signal reconstruction problems where an input signal is measured via matrix multiplication under additive white Gaussian noise. Our signals are assumed to be stationary and ergodic, but the input statistics…

Information Theory · Computer Science 2014-10-22 Yanting Ma , Junan Zhu , Dror Baron

Reliable anomaly detection in brain MRI remains challenging due to the scarcity of annotated abnormal cases and the frequent absence of key imaging modalities in real clinical workflows. Existing single-class or multi-class anomaly…

Computer Vision and Pattern Recognition · Computer Science 2025-12-25 Changwei Wu , Yifei Chen , Yuxin Du , Mingxuan Liu , Jinying Zong , Beining Wu , Jie Dong , Feiwei Qin , Yunkang Cao , Qiyuan Tian

Machine-learned coarse-grained (MLCG) molecular dynamics is a promising option for modeling biomolecules. However, MLCG models currently require large amounts of data from reference atomistic molecular dynamics or substantial computation…

Biological Physics · Physics 2024-07-02 Aleksander E. P. Durumeric , Yaoyi Chen , Frank Noé , Cecilia Clementi

Characterizing imaging noise is notoriously data-intensive and device-dependent, as modern sensors entangle physical signals with complex algorithmic artifacts. Current paradigms struggle to disentangle these factors without massive…

Computer Vision and Pattern Recognition · Computer Science 2026-01-27 Yuanjie Gu , Yiqun Wang , Chaohui Yu , Ang Xuan , Fan Wang , Zhi Lu , Biqin Dong

In real-world scenarios of image recognition, there exists substantial noise interference. Existing works primarily focus on methods such as adjusting networks or training strategies to address noisy image recognition, and the anti-noise…

Computer Vision and Pattern Recognition · Computer Science 2025-11-25 Jiarui Xue , Dongjian Yang , Ye Sun , Gang Liu

Removing the shape noise from the observed weak lensing field, i.e., denoising, enhances the potential of WL by accessing information at small scales where the shape noise dominates without denoising. We utilise two machine learning (ML)…

Cosmology and Nongalactic Astrophysics · Physics 2026-05-13 Shohei D. Aoyama , Ken Osato , Masato Shirasaki

Autoencoders are neural network formulations where the input and output of the network are identical and the goal is to identify the hidden representation in the provided datasets. Generally, autoencoders project the data nonlinearly onto a…

Signal Processing · Electrical Eng. & Systems 2019-07-10 Debjani Bhowick , Deepak K. Gupta , Saumen Maiti , Uma Shankar

Stochastic Gradient Langevin Dynamics infuses isotropic gradient noise to SGD to help navigate pathological curvature in the loss landscape for deep networks. Isotropic nature of the noise leads to poor scaling, and adaptive methods based…

Machine Learning · Computer Science 2019-06-13 Chandrasekaran Anirudh Bhardwaj

We have developed a deep learning algorithm for chemical shift prediction for atoms in molecular crystals that utilizes an atom-centered Gaussian density model for the 3D data representation of a molecule. We define multiple channels that…

While DETR-like architectures have demonstrated significant potential for monocular 3D object detection, they are often hindered by a critical limitation: the exclusion of 3D attributes from the bipartite matching process. This exclusion…

Computer Vision and Pattern Recognition · Computer Science 2026-01-06 Kiet Dang Vu , Trung Thai Tran , Kien Nguyen Do Trung , Duc Dung Nguyen

In practice, deep neural networks have been found to be vulnerable to various types of noise, such as adversarial examples and corruption. Various adversarial defense methods have accordingly been developed to improve adversarial robustness…

Machine Learning · Computer Science 2020-12-24 Aishan Liu , Xianglong Liu , Chongzhi Zhang , Hang Yu , Qiang Liu , Dacheng Tao
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