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Managing data and code in open scientific research is complicated by two key problems: large datasets often cannot be stored alongside code in repository platforms like GitHub, and iterative analysis can lead to unnoticed changes to data,…

Digital Libraries · Computer Science 2023-11-10 Vince Buffalo

Inferring adverse events (AEs) of medical products from Spontaneous Reporting Systems (SRS) databases is a core challenge in contemporary pharmacovigilance. Bayesian methods for pharmacovigilance are attractive for their rigorous ability to…

Methodology · Statistics 2025-02-17 Yihao Tan , Marianthi Markatou , Saptarshi Chakraborty

Cyber security attacks have become increasingly complex over time, with various phases of their kill chain, involving binaries, scripts, documents, executed commands, vulnerabilities, or network traffic. We propose a tool, GView, that is…

Cryptography and Security · Computer Science 2024-04-16 Raul Zaharia , Dragoş Gavriluţ , Gheorghiţă Mutu , Dorel Lucanu

Survival analysis, a foundational tool for modeling time-to-event data, has seen growing integration with machine learning (ML) approaches to handle the complexities of censored data and time-varying risks. Despite these advances,…

Quantitative Methods · Quantitative Biology 2025-02-05 Giovanni Birolo , Ivan Rossi , Flavio Sartori , Cesare Rollo , Tiziana Sanavia , Piero Fariselli

Data provenance is a valuable tool for detecting and preventing cyber attack, providing insight into the nature of suspicious events. For example, an administrator can use provenance to identify the perpetrator of a data leak, track an…

Cryptography and Security · Computer Science 2016-09-02 Adam Bates , Kevin Butler , Alin Dobra , Brad Reaves , Patrick Cable , Thomas Moyer , Nabil Schear

The increasing popularity of machine learning approaches and the rising awareness of data protection and data privacy presents an opportunity to build truly secure and trustworthy healthcare systems. Regulations such as GDPR and HIPAA…

Cryptography and Security · Computer Science 2020-11-17 Goutham Ramakrishnan , Aditya Nori , Hannah Murfet , Pashmina Cameron

Recent advances in the area of legal information systems have led to a variety of applications that promise support in processing and accessing legal documents. Unfortunately, these applications have various limitations, e.g., regarding…

Digital Libraries · Computer Science 2020-05-28 Malte Ostendorff , Till Blume , Saskia Ostendorff

Time-series learning is the bread and butter of data-driven *clinical decision support*, and the recent explosion in ML research has demonstrated great potential in various healthcare settings. At the same time, medical time-series problems…

Machine Learning · Computer Science 2023-10-31 Daniel Jarrett , Jinsung Yoon , Ioana Bica , Zhaozhi Qian , Ari Ercole , Mihaela van der Schaar

Software vulnerabilities continue to pose significant threats to modern information systems, requiring a timely and accurate risk assessment. Public repositories, such as the National Vulnerability Database and CVE details, are regularly…

Cryptography and Security · Computer Science 2026-04-09 Luat Do , Jiao Yin , Jinli Cao , Hua Wang

Substance use, substance use disorder, and overdoses related to substance use are major public health problems globally and in the United States. A key aspect of addressing these problems from a public health standpoint is improved…

Computation and Language · Computer Science 2023-09-06 Abeed Sarker

Analytics on personal data, such as individuals' mobility, financial, and health data can be of significant benefit to society. Such data is already collected by smartphones, apps and services today, but liberal societies have so far…

Social media has grown to be a crucial information source for pharmacovigilance studies where an increasing number of people post adverse reactions to medical drugs that are previously unreported. Aiming to effectively monitor various…

Machine Learning · Computer Science 2018-02-19 Shaika Chowdhury , Chenwei Zhang , Philip S. Yu

Sequential data is everywhere, and it can serve as a basis for research that will lead to improved processes. For example, road infrastructure can be improved by identifying bottlenecks in GPS data, or early diagnosis can be improved by…

Cryptography and Security · Computer Science 2020-02-25 Sigal Shaked , Lior Rokach

Software supply chain attacks have revealed blind spots in existing SCA tools, which are often limited to a single ecosystem and assess either software artifacts or community activity in isolation. This fragmentation across tools and…

Software Engineering · Computer Science 2025-12-02 Ziheng Liu , Runzhi He , Minghui Zhou

Movement disorders are becoming one of the leading causes of functional disability due to aging populations and extended life expectancy. Wearable health monitoring is emerging as an effective way to augment clinical care for movement…

Human-Computer Interaction · Computer Science 2019-03-19 Ganapati Bhat , Ranadeep Deb , Umit Y. Ogras

The well-known benefits of cloud computing have spurred the popularity of database service outsourcing, where one can resort to the cloud to conveniently store and query databases. Coming with such popular trend is the threat to data…

Cryptography and Security · Computer Science 2022-11-04 Yifeng Zheng , Weibo Wang , Songlei Wang , Xiaohua Jia , Hejiao Huang , Cong Wang

Health data is one of the most sensitive data for people, which attracts the attention of malicious activities. We propose an open-source health data management framework, that follows a patient-centric approach. The proposed framework…

Mining social media messages for health and drug related information has received significant interest in pharmacovigilance research. Social media sites (e.g., Twitter), have been used for monitoring drug abuse, adverse reactions of drug…

Computation and Language · Computer Science 2018-05-17 Debanjan Mahata , Jasper Friedrichs , Hitkul , Rajiv Ratn Shah

Hypersparse traffic matrices constructed from network packet source and destination addresses is a powerful tool for gaining insights into network traffic. SuiteSparse: GraphBLAS, an open source package or building, manipulating, and…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-09-20 Michael Houle , Michael Jones , Dan Wallmeyer , Risa Brodeur , Justin Burr , Hayden Jananthan , Sam Merrell , Peter Michaleas , Anthony Perez , Andrew Prout , Jeremy Kepner

We present ParcoursVis, an open-source Progressive Visual Analytics tool designed to explore aggregated electronic health record sequences of patients at scale. Existing tools are limited to about 20k patients that they can process fast…

Human-Computer Interaction · Computer Science 2025-09-23 Ambre Assor , Mickael Sereno , Jean-Daniel Fekete