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The internal dynamics of strongly interacting systems and that of biomolecules such as proteins display several important analogies, despite the huge difference in their characteristic energy and length scales. For example, in all such…

Biological Physics · Physics 2015-05-30 Pietro Faccioli

The connection between fundamental interactions acting in molecules in a fluid and macroscopically measured properties, such as the viscosity between colloidal particles coated with polymers, is studied here. The role that hydrodynamic and…

Soft Condensed Matter · Physics 2015-09-02 A. Gama Goicochea , M. A. Balderas Altamirano , R. Lopez-Esparza , M. A. Waldo , E. Perez

Strong three-body interactions above threshold govern the dynamics of many exotics and conventional excited mesons and baryons. Three-body finite-volume energies calculated from lattice QCD promise an ab-initio understanding of these…

High Energy Physics - Lattice · Physics 2020-03-25 M. Mai , M. Döring , C. Culver , A. Alexandru

Van der Waals (vdW) interactions are essential for describing molecules and materials, from drug design and catalysis to battery applications. These omnipresent interactions must also be accurately included in machine-learned force fields.…

Chemical Physics · Physics 2026-02-26 Evgeny Moerman , Adil Kabylda , Almaz Khabibrakhmanov , Alexandre Tkatchenko

Modeling of biomolecular systems plays an essential role in understanding biological processes, such as ionic flow across channels, protein modification or interaction, and cell signaling. The continuum model described by the…

Biological Physics · Physics 2015-12-08 Yu Qiao , Benzhuo Lu

We introduce a model for describing the dynamics of large numbers of interacting cells. The fundamental dynamical variables in the model are sub-cellular elements, which interact with each other through phenomenological intra- and…

Quantitative Methods · Quantitative Biology 2007-05-23 T. J. Newman

Long-range and multi-body interactions are crucial for quantum simulation and quantum computation. Yet, their practical realization using elementary pairwise interactions remains an outstanding challenge. We propose an experimental scheme…

Quantum Physics · Physics 2026-05-19 Runmin Wu , Bing Yang , Pieter W. Claeys , Hongzheng Zhao

Basic problems of the semiclassical microscopic modelling of strongly interactingsystems are discussed within the framework of Quantum Molecular Dynamics (QMD). This model allows to study the influence of several types of nucleonic…

Nuclear Theory · Physics 2014-11-18 C. Hartnack , Rajeev K. Puri , J. Aichelin , J. Konopka , S. A. Bass , H. Stoecker , W. Greiner

Ultracold polar molecules in multilayered systems have been experimentally realized very recently. While experiments study these systems almost exclusively through their chemical reactivity, the outlook for creating and manipulating exotic…

Quantum Physics · Physics 2013-04-19 A. G. Volosniev , J. R. Armstrong , D. V. Fedorov , A. S. Jensen , N. T. Zinner

Quantitative studies of cell metabolism are often based on large chemical reaction network models. A steady state approach is suited to analyze phenomena on the timescale of cell growth and circumvents the problem of incomplete experimental…

Molecular Networks · Quantitative Biology 2019-02-20 A. De Martino , D. De Martino , E. Marinari

Understanding the deep connection of microscopic dynamics and statistical regularity yields insights into the foundation of statistical mechanics. In this work, based on the classical three-body system under the Lennard-Jones potential upon…

Statistical Mechanics · Physics 2023-12-11 Zhenwei Yao

In conventional fluid mechanics, the chemical composition and thermodynamic state of a fluid-solid interface are not considered when establishing velocity-field boundary conditions. As a consequence, fluid simulations are usually not able…

Three coarse-grained molecular dynamics (MD) models are investigated with the aim of developing and analyzing multiscale methods which use MD simulations in parts of the computational domain and (less detailed) Brownian dynamics (BD)…

Computational Physics · Physics 2015-06-18 Radek Erban

This paper focuses on the derivation and simulation of mathematical models describing new plasma fraction in blood for patients undergoing simultaneous extracorporeal membrane oxygenation and therapeutic plasma exchange. Models for plasma…

Dynamical Systems · Mathematics 2020-06-12 Charles Puelz , Zach Danial , Jon Marinaro , Jay S. Raval , Boyce E. Griffith , Charles S. Peskin

The case of the planar circular restricted three-body problem is used as a test field in order to determine the character of the orbits of a small body which moves under the gravitational influence of the two heavy primary bodies. We…

Space Physics · Physics 2017-09-28 Euaggelos E. Zotos

The interactions of kaons (K) and antikaons ($\mathrm{\overline{K}}$) with few nucleons (N) were studied so far using kaonic atom data and measurements of kaon production and interaction yields in nuclei. Some details of the three-body KNN…

Nuclear Experiment · Physics 2024-01-09 ALICE Collaboration

Ultracold molecules confined in optical lattices or tweezer traps can be used to process quantum information and simulate the behaviour of many-body quantum systems. Molecules offer several advantages for these applications. They have a…

Quantum Gases · Physics 2024-01-11 Simon L. Cornish , Michael R. Tarbutt , Kaden R. A. Hazzard

We propose and theoretically analyse an experimental configuration in which lasers induce 3-spin interactions between trapped ions.By properly choosing the intensities and frequencies of the lasers, 3-spin couplings may be dominant or…

Quantum Physics · Physics 2009-06-10 A. Bermudez , D. Porras , M. A. Martin-Delgado

The tunneling process in a many-body system is a phenomenon which lies at the very heart of quantum mechanics. It appears in nature in the form of alpha-decay, fusion and fission in nuclear physics, photoassociation and photodissociation in…

The biomolecules in and around a living cell -- proteins, nucleic acids, lipids, carbohydrates -- continuously sample myriad conformational states that are thermally accessible at physiological temperatures. Simultaneously, a given…

Biomolecules · Quantitative Biology 2014-07-15 Cameron Mura , Charles E. McAnany
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