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Electron ptychography has recently achieved unprecedented resolution, offering valuable insights across diverse material systems, including in three dimensions. However, high-quality ptychographic reconstruction is computationally expensive…

Materials Science · Physics 2025-08-07 Chia-Hao Lee , Steven E. Zeltmann , Dasol Yoon , Desheng Ma , David A. Muller

Ptychography is an emerging imaging technique that is able to provide wavelength-limited spatial resolution from specimen with extended lateral dimensions. As a scanning microscopy method, a typical two-dimensional image requires a number…

Computational methods are driving high impact microscopy techniques such as ptychography. However, the design and implementation of new algorithms is often a laborious process, as many parts of the code are written in close-to-the-hardware…

Computer Vision and Pattern Recognition · Computer Science 2022-07-27 Francesco Guzzi , George Kourousias , Fulvio Billè , Roberto Pugliese , Alessandra Gianoncelli , Sergio Carrato

There is a need for open-source libraries in emission tomography that (i) use modern and popular backend code to encourage community contributions and (ii) offer support for the multitude of reconstruction techniques available in recent…

X-ray ptychography imaging at synchrotron facilities like the Advanced Photon Source (APS) involves controlling instrument hardwares to collect a set of diffraction patterns from overlapping coherent illumination spots on extended samples,…

Instrumentation and Detectors · Physics 2022-02-10 Ke Yue , Junjing Deng , Yi Jiang , Youssef Nashed , David Vine , Stefan Vogt

This work introduces CTorch, a PyTorch-compatible, GPU-accelerated, and auto-differentiable projector toolbox designed to handle various CT geometries with configurable projector algorithms. CTorch provides flexible scanner geometry…

Medical Physics · Physics 2025-12-15 Xiao Jiang , Grace J. Gang , J. Webster Stayman

Ptychography is an attractive advance of coherent diffraction imaging (CDI), which can provide high lateral resolution and wide field of view. The theoretical resolution of ptychography is dose-limited, therefore making ptychography…

Biological Physics · Physics 2025-01-09 Huixiang Lin , Fucai Zhang

Ptychography is now integrated as a tool in mainstream microscopy allowing quantitative and high-resolution imaging capabilities over a wide field of view. However, its ultimate performance is inevitably limited by the available coherent…

Computational Physics · Physics 2024-06-12 Wenhui Xu , Shoucong Ning , Pengju Sheng , Huixiang Lin , Angus I Kirkland , Yong Peng , Fucai Zhang

X-ray Ptychography is an advanced computational microscopy technique which is delivering exceptionally detailed quantitative imaging of biological and nanotechnology specimens. However coarse parametrisation in propagation distance,…

Image and Video Processing · Electrical Eng. & Systems 2021-10-20 Francesco Guzzi , George Kourousias , Fulvio Billè , Roberto Pugliese , Alessandra Gianoncelli , Sergio Carrato

While the advances in synchrotron light sources, together with the development of focusing optics and detectors, allow nanoscale ptychographic imaging of materials and biological specimens, the corresponding experiments can yield…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-04-05 Xiaodong Yu , Viktor Nikitin , Daniel J. Ching , Selin Aslan , Doga Gursoy , Tekin Bicer

Ptychography is a powerful computational imaging technique that transforms a collection of low-resolution images into a high-resolution sample reconstruction. Unfortunately, algorithms that are currently used to solve this reconstruction…

Ptychography is a data-intensive computational imaging technique that achieves high spatial resolution over large fields of view. The technique involves scanning a coherent beam across overlapping regions and recording diffraction patterns.…

Image and Video Processing · Electrical Eng. & Systems 2025-05-14 Refik Mert Cam , Junjing Deng , Rajkumar Kettimuthu , Mathew J. Cherukara , Tekin Bicer

Ptychography is an imaging technique that captures multiple overlapping snapshots of a sample, illuminated coherently by a moving localized probe. The image recovery from ptychographic data is generally achieved via an iterative algorithm…

Image and Video Processing · Electrical Eng. & Systems 2025-10-06 Weijie Gan , Qiuchen Zhai , Michael Thompson McCann , Cristina Garcia Cardona , Ulugbek S. Kamilov , Brendt Wohlberg

Ptychography is an enabling coherent diffraction imaging technique for both fundamental and applied sciences. Its applications in optical microscopy, however, fall short for its low imaging throughput and limited resolution. Here, we report…

Coherent microscopy techniques provide an unparalleled multi-scale view of materials across scientific and technological fields, from structural materials to quantum devices, from integrated circuits to biological cells. Driven by the…

The open-source PyNX toolkit [Favre-Nicolin et al (2011) arXiv:1010.2641, Mandula et al (2016)] has been extended to provide tools for coherent X-ray imaging data analysis and simulation. All calculations can be executed on graphical…

Despite significant progress of applying deep learning methods to the field of content-based image retrieval, there has not been a software library that covers these methods in a unified manner. In order to fill this gap, we introduce…

Information Retrieval · Computer Science 2020-08-06 Benyi Hu , Ren-Jie Song , Xiu-Shen Wei , Yazhou Yao , Xian-Sheng Hua , Yuehu Liu

Ever brighter light sources, fast parallel detectors, and advances in phase retrieval methods, have made ptychography a practical and popular imaging technique. Compared to previous techniques, ptychography provides superior robustness and…

Data Analysis, Statistics and Probability · Physics 2016-07-20 Stefano Marchesini , Hari Krishnan , Benedikt J. Daurer , David A. Shapiro , Talita Perciano , James A. Sethian , Filipe R. N. C. Maia

Deep learning has brought significant advancements to X-ray Computed Tomography (CT) reconstruction, offering solutions to challenges arising from modern imaging technologies. These developments benefit from methods that combine classical…

Machine Learning · Computer Science 2025-11-12 Linda-Sophie Schneider , Yipeng Sun , Chengze Ye , Markus Michen , Andreas Maier

We present \code{phaser}, an open-source Python package that provides a unified interface to both conventional and gradient descent-based ptychographic algorithms. Features such as mixed-state probe, probe position correction, and…

Computational Physics · Physics 2025-07-21 Colin Gilgenbach , Menglin Zhu , James M. LeBeau
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