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We consider quasi-static poroelastic systems with incompressible constituents. The nonlinear permeability is taken to be dependent on solid dilation, and physical types of boundary conditions (Dirichlet, Neumann, and mixed) for the fluid…

Analysis of PDEs · Mathematics 2022-02-23 Lorena Bociu , Boris Muha , Justin T. Webster

Effectively modeling phenomena present in highly nonlinear dynamical systems whilst also accurately quantifying uncertainty is a challenging task, which often requires problem-specific techniques. We present a novel, domain-agnostic…

Machine Learning · Statistics 2021-10-26 Thomas M. McDonald , Mauricio A. Álvarez

Stochasticity plays a key role in many biological systems, necessitating the calibration of stochastic mathematical models to interpret associated data. For model parameters to be estimated reliably, it is typically the case that they must…

Interactions between an internal flow and wall deformation occur in many biological systems. Such interactions can involve a complex and rich dynamical behavior and a number of peculiarities which depend on the flow parameter range. The aim…

Fluid Dynamics · Physics 2019-03-11 Mustapha Amaouche , Giuseppe Di Labbio

We study the dynamics of systems consisting of two spatially segregated ODE compartments coupled through a one-dimensional bulk diffusion field. For this coupled PDE-ODE system, we first employ a multi-scale asymptotic expansion to derive…

Chaotic Dynamics · Physics 2020-08-11 Frédéric Paquin-Lefebvre , Wayne Nagata , Michael J. Ward

The well known concept, to reduce the spatio-temporal dynamics beyond instabilities of trivial states to amplitude modulated patterns, is reviewed from the point of view of a formal perturbation expansion for general dissipative partial…

We present a theoretical study of nonlinear pattern formation in parametric surface waves for fluids of low viscosity, and in the limit of large aspect ratio. The analysis is based on a quasi-potential approximation to the equations…

patt-sol · Physics 2025-02-25 Wenbin Zhang , Jorge Vinals

In the context of population dynamics, identifying effective model features, such as fecundity and mortality rates, is generally a complex and computationally intensive process, especially when the dynamics are heterogeneous across the…

Populations and Evolution · Quantitative Biology 2025-07-01 Rainey Lyons , Vanja Dukic , David M. Bortz

We consider the averaging of the weakly nonlocal Symplectic Structures corresponding to local evolution PDE's in the Whitham method. The averaging procedure gives the weakly nonlocal Symplectic Structure of Hydrodynamic Type for the…

Exactly Solvable and Integrable Systems · Physics 2007-05-23 A. Ya. Maltsev

This paper is devoted to investigate the pattern formation of a volume-filling chemotaxis model with logistic cell growth. We first apply the local stability analysis to establish sufficient conditions of destabilization for uniform…

Analysis of PDEs · Mathematics 2016-11-22 Yazhou Han , Zhongfang Li , Jicheng Tao , Manjun Ma

Linear structural equation models represent direct causal effects as directed edges and confounding factors as bidirected edges. An open problem is to identify the causal parameters from correlations between the nodes. We investigate…

Artificial Intelligence · Computer Science 2022-03-07 Benito van der Zander , Marcel Wienöbst , Markus Bläser , Maciej Liśkiewicz

We present a contribution to the field of system identification of partial differential equations (PDEs), with emphasis on discerning between competing mathematical models of pattern-forming physics. The motivation comes from developmental…

Computational Physics · Physics 2024-03-28 Zhenlin Wang , Xun Huan , Krishna Garikipati

In pattern-forming systems, localized patterns are readily found when stable patterns exist at the same parameter values as the stable unpatterned state. Oscillons are spatially localized, time-periodic structures, which have been found…

Pattern Formation and Solitons · Physics 2018-05-29 A. S. Alnahdi , J. Niesen , A. M. Rucklidge

Pattern formation from homogeneity is well-studied, but less is known concerning symmetry-breaking instabilities in heterogeneous media. It is nontrivial to separate observed spatial patterning due to inherent spatial heterogeneity from…

Pattern Formation and Solitons · Physics 2019-12-10 Andrew L. Krause , Václav Klika , Thomas E. Woolley , Eamonn A. Gaffney

This paper investigates steady state solutions of a vasculogenesis model governed by coupled partial differential equations in a bounded two dimensional domain. Explicit steady state solutions are analytically constructed, and their…

Analysis of PDEs · Mathematics 2026-03-31 Sinchita Lahiri , Kun Zhao

We develop a reduced model for the slow unsteady dynamics of an isotropic chemically active particle near the threshold for spontaneous motion. Building on the steady theory developed in part I of this series, we match a weakly nonlinear…

Soft Condensed Matter · Physics 2023-02-24 Gunnar G. Peng , Ory Schnitzer

We propose a theoretical approach to derive amplitude equations governing the weakly nonlinear evolution of nonnormal dynamical systems when they experience transient growth or respond to harmonic forcing. This approach reconciles the…

Fluid Dynamics · Physics 2022-09-14 Yves-Marie Ducimetière , Edouard Boujo , François Gallaire

Experiments with networks of discrete reactive bistable electrochemical elements organized in regular and nonregular tree networks are presented to confirm an alternative to the Turing mechanism for the formation of self-organized…

Pattern Formation and Solitons · Physics 2016-11-15 N. E. Kouvaris , M. Sebek , A. S. Mikhailov , I. Z. Kiss

In this work, we define a practical identifiability criterion, (e, q)-identifiability, based on a parameter e, reflecting the noise in observed variables, and a parameter q, reflecting the mean-square error of the parameter estimator. This…

Methodology · Statistics 2026-03-13 Nora Heitzman-Breen , Vanja Dukic , David M. Bortz

We present the application of the variational-wavelet analysis to the quasiclassical calculations of the solutions of Wigner/von Neumann/Moyal and related equations corresponding to the nonlinear (polynomial) dynamical problems. (Naive)…

Quantum Physics · Physics 2017-08-23 Antonina N. Fedorova , Michael G. Zeitlin