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Health informatics research is characterized by diverse data modalities, rapid knowledge expansion, and the need to integrate insights across biomedical science, data analytics, and clinical practice. These characteristics make it…

Artificial Intelligence · Computer Science 2025-09-24 Yuxiao Cheng , Jinli Suo

The global demand for sustainable protein sources has accelerated the need for intelligent tools that can rapidly process and synthesise domain-specific scientific knowledge. In this study, we present a proof-of-concept multi-agent…

Artificial Intelligence · Computer Science 2025-06-26 Alexander D. Kalian , Jaewook Lee , Stefan P. Johannesson , Lennart Otte , Christer Hogstrand , Miao Guo

We present \textsc{WisPaper}, an end-to-end agent system that transforms how researchers discover, organize, and track academic literature. The system addresses two fundamental challenges. (1)~\textit{Semantic search limitations}: existing…

Understanding and extracting of information from large documents, such as business opportunities, academic articles, medical documents and technical reports, poses challenges not present in short documents. Such large documents may be…

Computation and Language · Computer Science 2019-10-10 Muhammad Mahbubur Rahman , Tim Finin

In this paper, we present a novel approach to knowledge extraction and retrieval using Natural Language Processing (NLP) techniques for material science. Our goal is to automatically mine structured knowledge from millions of research…

Computation and Language · Computer Science 2023-02-14 Xianjun Yang , Stephen Wilson , Linda Petzold

The rapid advancement of Large Language Models has transformed scientific research workflows, including enabling the automated extraction of data directly from published literature. Most existing efforts, however, focus on extracting simple…

Optics · Physics 2026-05-12 Xiao Fang , Ming Lü , Hanwen Liang , Xingshen Song , Kele Xu , Hui Cai , Chaofan Zhang

Rule-based information extraction has lately received a fair amount of attention from the database community, with several languages appearing in the last few years. Although information extraction systems are intended to deal with…

Databases · Computer Science 2018-01-01 Francisco Maturana , Cristian Riveros , Domagoj Vrgoč

The rapid discovery of materials is constrained by the lack of large, machine-readable datasets that couple performance metrics with structural context. Existing databases are either small, manually curated, or biased toward first…

Machine Learning · Computer Science 2026-03-10 Subham Ghosh , Abhishek Tewari

Deep Audio Analyzer is an open source speech framework that aims to simplify the research and the development process of neural speech processing pipelines, allowing users to conceive, compare and share results in a fast and reproducible…

Sound · Computer Science 2023-10-31 Valerio Francesco Puglisi , Oliver Giudice , Sebastiano Battiato

This paper investigates the use of large language models (LLMs) for extracting sample lists of polymer nanocomposites (PNCs) from full-length materials science research papers. The challenge lies in the complex nature of PNC samples, which…

Computation and Language · Computer Science 2024-03-04 Ghazal Khalighinejad , Defne Circi , L. C. Brinson , Bhuwan Dhingra

The production of large-scale political datasets typically demands extracting structured facts from vast piles of unstructured documents or web sources, a task that traditionally relies on expensive human experts and remains prohibitively…

Computation and Language · Computer Science 2026-03-20 Yifei Zhu , Songpo Yang , Jiangnan Zhu , Junyan Jiang

The rapid growth of research literature, particularly in large language models (LLMs), has made producing comprehensive and current survey papers increasingly difficult. This paper introduces autosurvey2, a multi-stage pipeline that…

Artificial Intelligence · Computer Science 2025-12-03 Siyi Wu , Chiaxin Liang , Ziqian Bi , Leyi Zhao , Tianyang Wang , Junhao Song , Yichao Zhang , Keyu Chen , Benji Peng , Xinyuan Song

Predicting molecular properties is a critical component of drug discovery. Recent advances in deep learning, particularly Graph Neural Networks (GNNs), have enabled end-to-end learning from molecular structures, reducing reliance on manual…

Computation and Language · Computer Science 2025-09-26 Peng Zhou , Lai Hou Tim , Zhixiang Cheng , Kun Xie , Chaoyi Li , Wei Liu , Xiangxiang Zeng

Frontier scientific reasoning is rapidly emerging as a key foundation for advancing AI agents in automated scientific discovery. Deep research agents offer a promising approach to this challenge. These models develop robust problem-solving…

Artificial Intelligence · Computer Science 2026-05-27 Tianshi Zheng , Rui Wang , Xiyun Li , Kelvin Kiu Wai Tam , Newt Nguyen Kim Hue Nam , Wei Fan , Yangqiu Song , Tianqing Fang

Translational medicine turns underspecified development goals into evidence synthesis that must combine literature, trials, patents, and quantitative multi-omics analysis while preserving identifiers, uncertainty, and retrievable…

Combinatorial experiments involve synthesis of sample libraries with lateral composition gradients requiring spatially-resolved characterization of structure and properties. Due to maturation of combinatorial methods and their successful…

The discovery and optimization of materials for specific applications is hampered by the practically infinite number of possible elemental combinations and associated properties, also known as the `combinatorial explosion'. By nature of the…

Computation and Language · Computer Science 2025-06-11 Lei Zhang , Markus Stricker

The exponential growth of scientific production makes secondary literature abridgements increasingly demanding. We introduce a new open-source framework for systematic reviews that significantly reduces time and workload for collecting and…

Digital Libraries · Computer Science 2022-02-24 Angelo D'Ambrosio , Hajo Grundmann , Tjibbe Donker

The automatic extraction of materials and related properties from the scientific literature is gaining attention in data-driven materials science (Materials Informatics). In this paper, we discuss Grobid-superconductors, our solution for…

Computation and Language · Computer Science 2023-11-27 Luca Foppiano , Pedro Baptista de Castro , Pedro Ortiz Suarez , Kensei Terashima , Yoshihiko Takano , Masashi Ishii

There has been a growing effort to replace manual extraction of data from research papers with automated data extraction based on natural language processing, language models, and recently, large language models (LLMs). Although these…

Computation and Language · Computer Science 2024-02-22 Maciej P. Polak , Dane Morgan