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In the rapidly evolving field of scientific research, efficiently extracting key information from the burgeoning volume of scientific papers remains a formidable challenge. This paper introduces an innovative framework designed to automate…

Information Retrieval · Computer Science 2024-01-31 Yangyang Liu , Shoubin Li

The development of synthesis procedures remains a fundamental challenge in materials discovery, with procedural knowledge scattered across decades of scientific literature in unstructured formats that are challenging for systematic…

This paper presents AppTechMiner, a rule-based information extraction framework that automatically constructs a knowledge base of all application areas and problem solving techniques. Techniques include tools, methods, datasets or…

Computation and Language · Computer Science 2017-11-15 Mayank Singh , Soham Dan , Sanyam Agarwal , Pawan Goyal , Animesh Mukherjee

The exponential increase in academic publications has made it increasingly difficult for researchers to remain up to date and systematically synthesize knowledge scattered across vast and fragmented research domains. Literature reviews,…

Digital Libraries · Computer Science 2025-06-12 Kiran Sharmaa , Parul Khurana , Ziya Uddina

Protein-ligand bioactivity data published in the literature are essential for drug discovery, yet manual curation struggles to keep pace with rapidly growing literature. Automated bioactivity extraction remains challenging because it…

Artificial Intelligence · Computer Science 2026-04-24 Jiaxian Yan , Jintao Zhu , Yuhang Yang , Qi Liu , Kai Zhang , Zaixi Zhang , Xukai Liu , Boyan Zhang , Kaiyuan Gao , Jinchuan Xiao , Enhong Chen

The vast majority of materials science knowledge exists in unstructured natural language, yet structured data is crucial for innovative and systematic materials design. Traditionally, the field has relied on manual curation and partial…

Extracting molecular structure-activity relationships (SARs) from scientific literature and patents is essential for drug discovery and materials research. However, this task remains challenging due to heterogeneous document formats and…

Computation and Language · Computer Science 2025-10-14 Jiaxi Zhuang , Kangning Li , Jue Hou , Mingjun Xu , Zhifeng Gao , Hengxing Cai

We present a modular framework powered by large language models (LLMs) that automates and streamlines key tasks across the early-stage computational drug discovery pipeline. By combining LLM reasoning with domain-specific tools, the…

LLM-powered multi-agent systems can now automate the full research pipeline from ideation to paper writing, but a fundamental question remains: automation for whom? Researchers operate under different resource configurations, hold different…

Artificial Intelligence · Computer Science 2026-05-18 Jinhang Xu , Qiyuan Zhu , Yujun Wu , Zirui Wang , Dongxu Zhang , Marcia Tian , Yiling Duan , Siyuan Li , Jingxuan Wei , Sirui Han , Yike Guo , Odin Zhang , Conghui He , Cheng Tan

Keyphrase extraction is the task of extracting a small set of phrases that best describe a document. Most existing benchmark datasets for the task typically have limited numbers of annotated documents, making it challenging to train…

Computation and Language · Computer Science 2020-10-26 Tuan Manh Lai , Trung Bui , Doo Soon Kim , Quan Hung Tran

Synthesis procedures play a critical role in materials research, as they directly affect material properties. With data-driven approaches increasingly accelerating materials discovery, there is growing interest in extracting synthesis…

Machine Learning · Computer Science 2025-10-22 Hirofumi Tsuruta , Masaya Kumagai

Materials science workflows rely on structured and unstructured data from the vast body of available scientific literature. However, most of the experimental details remain buried in text, tables, graphs and figures. Thus, constructing…

Computation and Language · Computer Science 2026-05-07 Achuth Chandrasekhar , Omid Barati Farimani , Radheesh Sharma Meda , Amir Barati Farimani

Autoresearch offers a flexible paradigm for automating scientific tasks, in which an AI agent proposes, implements, evaluates, and refines candidate solutions against a quantitative objective. Here, we use composition-based…

Materials Science · Physics 2026-05-15 Matteo Cobelli , Stefano Sanvito

Scientific discovery is slowed by fragmented literature that requires excessive human effort to gather, analyze, and understand. AI tools, including autonomous summarization and question answering, have been developed to aid in…

Artificial Intelligence · Computer Science 2026-04-03 Maxwell J. Jacobson , Daniel Xie , Jackson Shen , Adil Wazeer , Haiyan Wang , Xinghang Zhang , Yexiang Xue

Automated Scientific Discovery (ASD) systems can help automatically generate and run code-based experiments, but their capabilities are limited by the code they can reliably generate from parametric knowledge alone. As a result, current…

Artificial Intelligence · Computer Science 2026-05-18 Peter Jansen , Samiah Hassan , Pragnya Narasimha

Biomedical research results are being published at a high rate, and with existing search engines, the vast amount of published work is usually easily accessible. However, reproducing published results, either experimental data or…

Molecular Networks · Quantitative Biology 2017-06-19 Kai-Wen Liang , Qinsi Wang , Cheryl Telmer , Divyaa Ravichandran , Peter Spirtes , Natasa Miskov-Zivanov

Selecting efficient multi-step synthetic routes is a central challenge in organic synthesis, particularly in medicinal and process chemistry, where route choice directly impacts feasibility, cost, and development efficiency. Data-driven…

This study presents OpenExtract, an open-source pipeline for automated data extraction in large-scale systematic literature reviews. The pipeline queries large language models (LLMs) to predict data entries based on relevant sections of…

Recent developments in Large Language Model (LLM)-based agents have shown impressive capabilities spanning multiple domains, exemplified by deep research systems that demonstrate superior performance on complex information-seeking and…

Computation and Language · Computer Science 2025-09-03 Ailing Yu , Lan Yao , Jingnan Liu , Zhe Chen , Jiajun Yin , Yuan Wang , Xinhao Liao , Zhiling Ye , Ji Li , Yun Yue , Hansong Xiao , Hualei Zhou , Chunxiao Guo , Peng Wei , Junwei Liu , Jinjie Gu

Extracting structured information from scientific literature is critical for accelerating discovery, yet Large Language Models (LLMs) often struggle in specialized domains that require expert knowledge and generalize poorly across tasks. We…

Computation and Language · Computer Science 2026-05-22 Tek Raj Chhetri , Yibei Chen , Puja Trivedi , Dorota Jarecka , Saif Haobsh , Patrick Ray , Lydia Ng , Satrajit S. Ghosh