Related papers: Labeling and folding multi-labeled trees
Arboreal networks are a generalization of rooted trees, defined by keeping the tree-like structure, but dropping the requirement for a single root. Just as the class of cographs is precisely the class of undirected graphs that can be…
Graceful tree conjecture is a well-known open problem in graph theory. Here we present a computational approach to this conjecture. An algorithm for finding graceful labelling for trees is proposed. With this algorithm, we show that every…
An increasing 1,2-tree is a labeled graph formed by starting with a vertex and then repeatedly attaching a leaf to a vertex or a triangle to an edge, the labeling of the vertices corresponding to the order in which the vertices are added.…
We unify and extend previous bijections on plane quadrangulations to bipartite and quasibipartite plane maps. Starting from a bipartite plane map with a distinguished edge and two distinguished corners (in the same face or in two different…
Let $\T_{n}$ be the set of rooted labeled trees on $\set{0,...,n}$. A maximal decreasing subtree of a rooted labeled tree is defined by the maximal subtree from the root with all edges being decreasing. In this paper, we study a new…
We present a complete classification of the deterministic distributed time complexity for a family of graph problems: binary labeling problems in trees. These are locally checkable problems that can be encoded with an alphabet of size two…
Multi-label network classification is a well-known task that is being used in a wide variety of web-based and non-web-based domains. It can be formalized as a multi-relational learning task for predicting nodes labels based on their…
Extreme multi-label classification (XMC) refers to supervised multi-label learning involving hundreds of thousand or even millions of labels. In this paper, we develop a suite of algorithms, called Bonsai, which generalizes the notion of…
Given a rooted, binary phylogenetic network and a rooted, binary phylogenetic tree, can the tree be embedded into the network? This problem, called \textsc{Tree Containment}, arises when validating networks constructed by phylogenetic…
Rooted phylogenetic networks provide an explicit representation of the evolutionary history of a set $X$ of sampled species. In contrast to phylogenetic trees which show only speciation events, networks can also accommodate reticulate…
Two decades ago, Chauve, Dulucq and Guibert showed that the number of rooted trees on the vertex set $[n+1]$ in which exactly $k$ children of the root are lower-numbered than the root is $\binom{n}{k} \, n^{n-k}$. Here I give a simpler…
Rooted acyclic graphs appear naturally when the phylogenetic relationship of a set $X$ of taxa involves not only speciations but also recombination, horizontal transfer, or hybridization, that cannot be captured by trees. A variety of…
Recently, deep neural networks have expanded the state-of-art in various scientific fields and provided solutions to long standing problems across multiple application domains. Nevertheless, they also suffer from weaknesses since their…
In this paper, we give a decomposition of triply rooted trees into three doubly rooted trees. This leads to a combinatorial interpretation of an identity conjectured by Lacasse in the study of the PAC-Bayesian machine learning theory, and…
Recently, considerable effort has been put into developing fast algorithms to reconstruct a rooted phylogenetic network that explains two rooted phylogenetic trees and has a minimum number of hybridization vertices. With the standard…
In this article, Temperley's bijection between spanning trees of the square grid on the one hand, and perfect matchings (also known as dimer coverings) of the square grid on the other, is extended to the setting of general planar directed…
Recently, so-called treebased phylogenetic networks have gained considerable interest in the literature, where a treebased network is a network that can be constructed from a phylogenetic tree, called the base tree, by adding additional…
We give a simple formula for the number of hypertrees with $k$ hyperedges of given sizes and $n+1$ labelled vertices with prescribed degrees. A slight generalization of this formula counts labelled bipartite trees with prescribed degrees in…
A phylogenetic tree is a graphical representation of an evolutionary history of taxa in which the leaves correspond to the taxa and the non-leaves correspond to speciations. One of important problems in phylogenetic analysis is to assemble…
We study three combinatorial models for the lower-triangular matrix with entries $t_{n,k} = \binom{n}{k} n^{n-k}$: two involving rooted trees on the vertex set $[n+1]$, and one involving partial functional digraphs on the vertex set $[n]$.…