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Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…

Quantitative Methods · Quantitative Biology 2016-03-08 Cedric Chauve , Julien Courtiel , Yann Ponty

Binary search trees (BSTs) are fundamental data structures whose performance is largely governed by tree height. We introduce a block model for constructing BSTs by embedding internal BSTs into the nodes of an external BST -- a structure…

Probability · Mathematics 2026-03-17 John Peca-Medlin , Chenyang Zhong

When considering the number of subtrees of trees, the extremal structures which maximize this number among binary trees and trees with a given maximum degree lead to some interesting facts that correlate to other graphical indices in…

Combinatorics · Mathematics 2012-10-11 Xiu-Mei Zhang , Xiao-Dong Zhang , Daniel Gray , Hua Wang

We study the distribution of fringe trees in Patricia tries (extending earlier results by Ischebeck (2025)) and compressed binary search trees; both cases are random binary trees that have been compressed by deleting nodes of outdegree 1 so…

Probability · Mathematics 2026-02-03 Svante Janson

Binary search trees (BST) are a popular type of data structure when dealing with ordered data. Indeed, they enable one to access and modify data efficiently, with their height corresponding to the worst retrieval time. From a probabilistic…

Probability · Mathematics 2025-01-28 Benoît Corsini , Victor Dubach , Valentin Féray

This extended abstract is dedicated to the analysis of the height of non-plane unlabelled rooted binary trees. The height of such a tree chosen uniformly among those of size $n$ is proved to have a limiting theta distribution, both in a…

Combinatorics · Mathematics 2008-07-16 Nicolas Broutin , Philippe Flajolet

A binary tanglegram is a pair <S,T> of binary trees whose leaf sets are in one-to-one correspondence; matching leaves are connected by inter-tree edges. For applications, for example in phylogenetics or software engineering, it is required…

Data Structures and Algorithms · Computer Science 2009-05-15 Martin Nöllenburg , Danny Holten , Markus Völker , Alexander Wolff

We introduce the notion of doubly rooted plane trees and give a decomposition of these trees, called the butterfly decomposition which turns out to have many applications. From the butterfly decomposition we obtain a one-to-one…

Combinatorics · Mathematics 2007-05-23 William Y. C. Chen , Nelson Y. Li , Louis W. Shapiro

Recently, Han discovered two formulas involving binary trees which have the interestig property that hooklengths appear as exponents. The purpose of this note is to give a probabilistic proof of one of Han's formulas. Yang has generalized…

Combinatorics · Mathematics 2008-06-12 Bruce E. Sagan

We consider the creation conditions of diverse hierarchical trees both analytically and numerically. A connection between the probabilities to create hierarchical levels and the probability to associate these levels into a united structure…

Statistical Mechanics · Physics 2011-06-21 A. I. Olemskoi , S. S. Borysov , I. A. Shuda

In this note, by counting some colored plane trees we obtain several binomial identities. These identities can be viewed as specific evaluations of certain generalizations of the Narayana polynomials. As consequences, it provides…

Combinatorics · Mathematics 2015-12-15 Ricky X. F. Chen , Christian M. Reidys

We consider random binary trees that appear as the output of certain standard algorithms for sorting and searching if the input is random. We introduce the subtree size metric on search trees and show that the resulting metric spaces…

Probability · Mathematics 2014-05-06 Rudolf Grübel

The hierarchical structure of the butterfly fractal -- the Hofstader butterfly, is found to be described by an octonary tree. In this framework of building the butterfly graph, every iteration generates sextuplets of butterflies, each with…

General Mathematics · Mathematics 2024-06-04 Indubala I Satija

Applying a method to reconstruct a phylogenetic tree from random data provides a way to detect whether that method has an inherent bias towards certain tree `shapes'. For maximum parsimony, applied to a sequence of random 2-state data, each…

Populations and Evolution · Quantitative Biology 2014-06-03 Mareike Fischer , Michelle Galla , Lina Herbst , Mike Steel

Working with generating functions, the combinatorics of a recurrence relation can be expressed in a way that allows for more efficient calculation of the quantity. This is true of the Catalan numbers for an ordered binary tree…

Combinatorics · Mathematics 2025-03-05 David Serena , William J Buchanan

In analogy to other concepts of a similar nature, we define the inducibility of a rooted binary tree. Given a fixed rooted binary tree $B$ with $k$ leaves, we let $\gamma(B,T)$ be the proportion of all subsets of $k$ leaves in $T$ that…

Combinatorics · Mathematics 2016-01-27 Éva Czabarka , László A. Székely , Stephan Wagner

We reduce the calculation of the simplest Hodge integrals to some sums over decorated trees. Since Hodge integrals are already calculated, this gives a proof of a rather interesting combinatorial theorem and a new representation of…

Algebraic Geometry · Mathematics 2017-08-22 S. V. Shadrin

This paper introduces a new combinatorial framework for modeling the growth of binary trees through a discrete evolution process that incorporates a growing rule and an extinction rule. Building upon the theory of increasingly labeled…

Combinatorics · Mathematics 2026-03-30 Olivier Bodini , Antoine Genitrini , Khaydar Nurligareev

In this paper, we present a new method for determining the optimal pebbling number of a complete binary tree. This method reveals a curious connection between the optimal pebbling numbers of complete binary trees and the Conolly-Fox…

Combinatorics · Mathematics 2021-09-16 Thomas M. Lewis , Fabian Salinas

We construct a stationary random tree, embedded in the upper half plane, with prescribed offspring distribution and whose vertices are the atoms of a unit Poisson point process. This process which we call Hammersley's tree process extends…

Probability · Mathematics 2016-05-11 Anne-Laure Basdevant , Lucas Gerin , Jean-Baptiste Gouere , Arvind Singh