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Predicting future neural activity is a core challenge in modeling brain dynamics, with applications ranging from scientific investigation to closed-loop neurotechnology. While recent models of population activity emphasize interpretability…

Neurons and Cognition · Quantitative Biology 2026-02-11 Yu Duan , Hamza Tahir Chaudhry , Misha B. Ahrens , Christopher D Harvey , Matthew G Perich , Karl Deisseroth , Kanaka Rajan

Recent work suggests that large-scale, multi-animal modeling can significantly improve neural recording analysis. However, for functional calcium traces, existing approaches remain task-specific, limiting transfer across common neuroscience…

Quantitative Methods · Quantitative Biology 2026-04-09 Xinhong Xu , Yimeng Zhang , Qichen Qian , Yuanlong Zhang

Decoding stimuli or behaviour from recorded neural activity is a common approach to interrogate brain function in research, and an essential part of brain-computer and brain-machine interfaces. Reliable decoding even from small neural…

Neurons and Cognition · Quantitative Biology 2023-01-06 Justin Jude , Matthew G. Perich , Lee E. Miller , Matthias H. Hennig

The learning and recognition of object features from unregulated input has been a longstanding challenge for artificial intelligence systems. Brains are adept at learning stable representations given small samples of noisy observations;…

Neurons and Cognition · Quantitative Biology 2024-09-30 Roy Moyal , Kyrus R. Mama , Matthew Einhorn , Ayon Borthakur , Thomas A. Cleland

Real-time decoding of neural activity is central to neuroscience and neurotechnology applications, from closed-loop experiments to brain-computer interfaces, where models are subject to strict latency constraints. Traditional methods,…

Neurons and Cognition · Quantitative Biology 2025-11-10 Avery Hee-Woon Ryoo , Nanda H. Krishna , Ximeng Mao , Mehdi Azabou , Eva L. Dyer , Matthew G. Perich , Guillaume Lajoie

Biological systems represent time from microseconds to years. An important gap in our knowledge concerns the mechanisms for encoding time intervals of hundreds of milliseconds to minutes that matter for tasks like navigation, communication,…

Neurons and Cognition · Quantitative Biology 2025-05-22 Raphaël Lafond-Mercier , Leonard Maler , Avner Wallach , André Longtin

High-content screening (HCS) assays based on high-throughput microscopy techniques such as Cell Painting have enabled the interrogation of cells' morphological responses to perturbations at an unprecedented scale. The collection of such…

Machine Learning · Computer Science 2025-09-25 Mingyu Lu , Ethan Weinberger , Chanwoo Kim , Su-In Lee

Characterizing imaging noise is notoriously data-intensive and device-dependent, as modern sensors entangle physical signals with complex algorithmic artifacts. Current paradigms struggle to disentangle these factors without massive…

Computer Vision and Pattern Recognition · Computer Science 2026-01-27 Yuanjie Gu , Yiqun Wang , Chaohui Yu , Ang Xuan , Fan Wang , Zhi Lu , Biqin Dong

Our ability to use deep learning approaches to decipher neural activity would likely benefit from greater scale, in terms of both model size and datasets. However, the integration of many neural recordings into one unified model is…

We present Statistical Calibrated Activation Pruning (SCAP), a post-training activation pruning framework that (1) generalizes sparsification by input activations of Fully-Connected layers for generic and flexible application across…

Machine Learning · Computer Science 2024-12-11 Vui Seng Chua , Yujie Pan , Nilesh Jain

General-purpose foundation models for neural time series can help accelerate neuroscientific discoveries and enable applications such as brain computer interfaces (BCIs). A key component in scaling these models is population-level…

Machine Learning · Computer Science 2025-11-18 Eshani Patel , Yisong Yue , Geeling Chau

We introduce submodel co-training, a regularization method related to co-training, self-distillation and stochastic depth. Given a neural network to be trained, for each sample we implicitly instantiate two altered networks, ``submodels'',…

Computer Vision and Pattern Recognition · Computer Science 2022-12-12 Hugo Touvron , Matthieu Cord , Maxime Oquab , Piotr Bojanowski , Jakob Verbeek , Hervé Jégou

Deep learning based neural decoding from stereotactic electroencephalography (sEEG) would likely benefit from scaling up both dataset and model size. To achieve this, combining data across multiple subjects is crucial. However, in sEEG…

Pre-training is a dominant paradigm in computer vision. For example, supervised ImageNet pre-training is commonly used to initialize the backbones of object detection and segmentation models. He et al., however, show a surprising result…

Computer Vision and Pattern Recognition · Computer Science 2020-11-17 Barret Zoph , Golnaz Ghiasi , Tsung-Yi Lin , Yin Cui , Hanxiao Liu , Ekin D. Cubuk , Quoc V. Le

Learning robust representations across extremely heterogeneous modalities remains a fundamental challenge in multi-modal vision. As a critical and profound instantiation of this challenge, high-resolution (HR) joint optical and synthetic…

Computer Vision and Pattern Recognition · Computer Science 2026-04-21 Bowen Peng , Yongxiang Liu , Jie Zhou , Xiaodong Chen , Tianpeng Liu , Xiaogang Yu , Li Liu

This paper introduces Stress-Aware Learning, a resilient neural training paradigm in which deep neural networks dynamically adjust their optimization behavior - whether under stable training regimes or in settings with uncertain dynamics -…

Machine Learning · Computer Science 2025-08-04 Ashkan Shakarami , Yousef Yeganeh , Azade Farshad , Lorenzo Nicole , Stefano Ghidoni , Nassir Navab

Calcium imaging allows for the parallel measurement of large neuronal populations in a spatially resolved and minimally invasive manner, and has become a gold-standard for neuronal functionality. While deep generative models have been…

Neurons and Cognition · Quantitative Biology 2025-10-02 Berta Ros , Mireia Olives-Verger , Caterina Fuses , Josep M Canals , Jordi Soriano , Jordi Abante

One of the roadblocks for training generalist robotic models today is heterogeneity. Previous robot learning methods often collect data to train with one specific embodiment for one task, which is expensive and prone to overfitting. This…

Robotics · Computer Science 2024-10-01 Lirui Wang , Xinlei Chen , Jialiang Zhao , Kaiming He

Neural networks trained with stochastic gradient descent exhibit an inductive bias towards simpler decision boundaries, typically converging to a narrow family of functions, and often fail to capture more complex features. This phenomenon…

Machine Learning · Computer Science 2024-11-08 Rahul Vashisht , P. Krishna Kumar , Harsha Vardhan Govind , Harish G. Ramaswamy

Recent advances in deep learning have resulted in image compression algorithms that outperform JPEG and JPEG 2000 on the standard Kodak benchmark. However, they are slow to train (due to backprop-through-time) and, to the best of our…

Computer Vision and Pattern Recognition · Computer Science 2022-01-31 Ankur Mali , Alexander Ororbia , Daniel Kifer , Lee Giles
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