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Feed-forward 3D foundation models face a key challenge: the quadratic computational cost introduced by global attention, which severely limits scalability as input length increases. Concurrent acceleration methods, such as token merging,…

Computer Vision and Pattern Recognition · Computer Science 2026-03-19 Xinze Li , Pengxu Chen , Yiyuan Wang , Weifeng Su , Wentao Cheng

Vision-Language Models (VLMs) excel at visual reasoning but still struggle with integrating external knowledge. Retrieval-Augmented Generation (RAG) is a promising solution, but current methods remain inefficient and often fail to maintain…

Computer Vision and Pattern Recognition · Computer Science 2026-01-08 Gen Li , Peiyu Liu

Differentiable vector graphics have enabled powerful gradient-based optimization of vector primitives directly from raster images. However, existing frameworks formulate this as a flat optimization problem, forcing hundreds to thousands of…

Computer Vision and Pattern Recognition · Computer Science 2026-05-13 Jaerin Lee , Kanggeon Lee , Kyoung Mu Lee

Learning-to-rank, a machine learning technique widely used in information retrieval, has recently been applied to the problem of ligand-based virtual screening, to accelerate the early stages of new drug development. Ranking prediction…

Biomolecules · Quantitative Biology 2022-08-30 Kairi Furui , Masahito Ohue

Accurate and robust medical image classification is a challenging task, especially in application domains where available annotated datasets are small and present high imbalance between target classes. Considering that data acquisition is…

Computer Vision and Pattern Recognition · Computer Science 2024-10-02 Neil De La Fuente , Mireia Majó , Irina Luzko , Henry Córdova , Gloria Fernández-Esparrach , Jorge Bernal

Breakthroughs in high-accuracy protein structure prediction, such as AlphaFold, have established receptor-based molecule design as a critical driver for rapid early-phase drug discovery. However, most approaches still struggle to balance…

Biomolecules · Quantitative Biology 2025-06-18 Dong Xu , Zhangfan Yang , Ka-chun Wong , Zexuan Zhu , Jiangqiang Li , Junkai Ji

Scaffold based drug discovery (SBDD) is a technique for drug discovery which pins chemical scaffolds as the framework of design. Scaffolds, or molecular frameworks, organize the design of compounds into local neighborhoods. We formalize…

Quantitative Methods · Quantitative Biology 2021-09-13 Austin Clyde , Ashka Shah , Max Zvyagin , Arvind Ramanathan , Rick Stevens

Virtual screening (VS) aims to identify bioactive compounds from vast chemical libraries, but remains difficult in low-label regimes where only a few actives are known. Existing methods largely rely on general-purpose molecular fingerprints…

Machine Learning · Computer Science 2025-09-23 Jungseob Yi , Seoyoung Choi , Sun Kim , Sangseon Lee

We introduce and define a novel task-Scene-Aware Visually-Driven Speech Synthesis, aimed at addressing the limitations of existing speech generation models in creating immersive auditory experiences that align with the real physical world.…

Sound · Computer Science 2026-02-04 Chengyuan Ma , Jiawei Jin , Ruijie Xiong , Chunxiang Jin , Canxiang Yan , Wenming Yang

Graph-level anomaly detection (GAD) is critical in diverse domains such as drug discovery, yet high labeling costs and dataset imbalance hamper the performance of Graph Neural Networks (GNNs). To address these issues, we propose FracAug, an…

Machine Learning · Computer Science 2025-09-26 Xiangyu Dong , Xingyi Zhang , Sibo Wang

The AIDS epidemic has killed 40 million people and caused serious global problems. The identification of new HIV-inhibiting molecules is of great importance for combating the AIDS epidemic. Here, the Classifier Guidance Diffusion model and…

Machine Learning · Computer Science 2024-07-24 Jiaqing Lyu , Changjie Chen , Bing Liang , Yijia Zhang

Automated radiology report generation is essential for improving diagnostic efficiency and reducing the workload of medical professionals. However, existing methods face significant challenges, such as disease class imbalance and…

Methodology · Statistics 2025-07-11 Qin Zhou , Guoyan Liang , Xindi Li , Jingyuan Chen , Wang Zhe , Chang Yao , Sai Wu

Developing new fluorophores for advanced imaging techniques requires exploring new chemical space. While generative AI approaches have shown promise in designing novel dye scaffolds, prior efforts often produced synthetically intractable…

In the medical field, the limited availability of large-scale datasets and labor-intensive annotation processes hinder the performance of deep models. Diffusion-based generative augmentation approaches present a promising solution to this…

Computer Vision and Pattern Recognition · Computer Science 2026-02-19 Xinrui Zhou , Yuhao Huang , Haoran Dou , Shijing Chen , Ao Chang , Jia Liu , Weiran Long , Jian Zheng , Erjiao Xu , Jie Ren , Alejandro F. Frangi , Ruobing Huang , Jun Cheng , Xiaomeng Li , Wufeng Xue , Dong Ni

Unsupervised representation learning methods like SwAV are proved to be effective in learning visual semantics of a target dataset. The main idea behind these methods is that different views of a same image represent the same semantics. In…

Computer Vision and Pattern Recognition · Computer Science 2022-06-13 Mehdi Seyfi , Amin Banitalebi-Dehkordi , Yong Zhang

With the rapid development of computational pathology, many AI-assisted diagnostic tasks have emerged. Cellular nuclei segmentation can segment various types of cells for downstream analysis, but it relies on predefined categories and lacks…

Computer Vision and Pattern Recognition · Computer Science 2025-03-03 Chunlin Zhong , Shuang Hao , Junhua Wu , Xiaona Chang , Jiwei Jiang , Xiu Nie , He Tang , Xiang Bai

Class imbalance in graph data presents significant challenges for node classification. While existing methods, such as SMOTE-based approaches, partially mitigate this issue, they still exhibit limitations in constructing imbalanced graphs.…

Machine Learning · Computer Science 2024-03-28 Yulan Hu , Sheng Ouyang , Zhirui Yang , Yong Liu

Artificial Neural Networks (ANN) have been popularized in many science and technological areas due to their capacity to solve many complex pattern matching problems. That is the case of Virtual Screening, a research area that studies how to…

Neural and Evolutionary Computing · Computer Science 2020-06-05 Christian F. Frasser , Carola de Benito , Vincent Canals , Miquel Roca , Pedro J. Ballester , Josep L. Rossello

The task of Visual Relationship Recognition (VRR) aims to identify relationships between two interacting objects in an image and is particularly challenging due to the widely-spread and highly imbalanced distribution of <subject, relation,…

Computer Vision and Pattern Recognition · Computer Science 2025-06-03 Parul Gupta , Tuan Nguyen , Abhinav Dhall , Munawar Hayat , Trung Le , Thanh-Toan Do

We present a new method for understanding the performance of a model in virtual drug screening tasks. While most virtual screening problems present as a mix between ranking and classification, the models are typically trained as regression…

Quantitative Methods · Quantitative Biology 2020-06-03 Austin Clyde , Xiaotian Duan , Rick Stevens