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Thresholding--the pruning of nodes or edges based on their properties or weights--is an essential preprocessing tool for extracting interpretable structure from complex network data, yet existing methods face several key limitations.…

Social and Information Networks · Computer Science 2025-10-07 Adam Schroeder , Russell Funk , Jingyi Guan , Taylor Okonek , Lori Ziegelmeier

Modern deep learning models are highly overparameterized, resulting in large sets of parameter configurations that yield the same outputs. A significant portion of this redundancy is explained by symmetries in the parameter…

Machine Learning · Computer Science 2025-12-12 Bo Zhao , Robin Walters , Rose Yu

Deep neural network training often involves stochastic optimization, meaning each run will produce a different model. This implies that hyperparameters of the training process, such as the random seed itself, can potentially have…

Machine Learning · Statistics 2025-04-17 Sinjini Banerjee , Tim Marrinan , Reilly Cannon , Tony Chiang , Anand D. Sarwate

Instruction tuning is crucial for adapting large language models (LLMs) to align with user intentions. Numerous studies emphasize the significance of the quality of instruction tuning (IT) data, revealing a strong correlation between IT…

Computation and Language · Computer Science 2025-05-19 Hyeonseok Moon , Jaehyung Seo , Heuiseok Lim

Persistent homology is an area within topological data analysis (TDA) that can uncover different dimensional holes (connected components, loops, voids, etc.) in data. The holes are characterized, in part, by how long they persist across…

Methodology · Statistics 2025-04-08 Sixtus Dakurah , Jessi Cisewski-Kehe

Persistent homology has become an important tool for extracting geometric and topological features from data, whose multi-scale features are summarized in a persistence diagram. From a statistical perspective, however, persistence diagrams…

Statistics Theory · Mathematics 2022-06-07 Siddharth Vishwanath , Kenji Fukumizu , Satoshi Kuriki , Bharath Sriperumbudur

Topological data analysis is an emerging mathematical concept for characterizing shapes in multi-scale data. In this field, persistence diagrams are widely used as a descriptor of the input data, and can distinguish robust and noisy…

Machine Learning · Statistics 2017-06-13 Genki Kusano , Kenji Fukumizu , Yasuaki Hiraoka

Multiplexed imaging allows multiple cell types to be simultaneously visualised in a single tissue sample, generating unprecedented amounts of spatially-resolved, biological data. In topological data analysis, persistent homology provides…

Quantitative Methods · Quantitative Biology 2025-05-06 Maria Torras-Pérez , Iris H. R. Yoon , Praveen Weeratunga , Ling-Pei Ho , Helen M. Byrne , Ulrike Tillmann , Heather A. Harrington

The success of modern Artificial Intelligence (AI) technologies depends critically on the ability to learn non-linear functional dependencies from large, high dimensional data sets. Despite recent high-profile successes, empirical evidence…

Machine Learning · Computer Science 2019-01-25 Luca Bortolussi , Guido Sanguinetti

Topological correctness is critical for segmentation of tubular structures, which pervade in biomedical images. Existing topological segmentation loss functions are primarily based on the persistent homology of the image. They match the…

Computer Vision and Pattern Recognition · Computer Science 2025-10-29 Bo Wen , Haochen Zhang , Dirk-Uwe G. Bartsch , William R. Freeman , Truong Q. Nguyen , Cheolhong An

Neural network training is typically viewed as gradient descent on a loss surface. We propose a fundamentally different perspective: learning is a structure-preserving transformation (a functor L) between the space of network parameters…

Machine Learning · Computer Science 2025-10-07 Abdulrahman Tamim

As datasets used in scientific applications become more complex, studying the geometry and topology of data has become an increasingly prevalent part of the data analysis process. This can be seen for example with the growing interest in…

Algebraic Geometry · Mathematics 2024-03-22 Ezzeddine El Sai , Parker Gara , Markus J. Pflaum

Modern machine learning increasingly leverages the insight that high-dimensional data often lie near low-dimensional, non-linear manifolds, an idea known as the manifold hypothesis. By explicitly modeling the geometric structure of data…

Machine Learning · Computer Science 2026-03-02 Willem Diepeveen , Deanna Needell

Topological data analysis (TDA) is a rising branch in modern applied mathematics. It extracts topological structures as features of a given space and uses these features to analyze digital data. Persistent homology, one of the central tools…

Algebraic Topology · Mathematics 2025-05-26 Chuan-Shen Hu

This paper investigates the foundations of deep learning through insight of geometry, algebra and differential calculus. At is core, artificial intelligence relies on assumption that data and its intrinsic structure can be embedded into…

Differential Geometry · Mathematics 2025-10-22 Tsemo Aristide

Datasets for training object recognition systems are steadily increasing in size. This paper investigates the question of whether existing detectors will continue to improve as data grows, or saturate in performance due to limited model…

Computer Vision and Pattern Recognition · Computer Science 2015-03-06 Xiangxin Zhu , Carl Vondrick , Charless Fowlkes , Deva Ramanan

Machine learning has been proven to be effective in various application areas, such as object and speech recognition on mobile systems. Since a critical key to machine learning success is the availability of large training data, many…

Machine Learning · Computer Science 2021-01-06 Hyeongmin Cho , Sangkyun Lee

Persistent homology (PH) is a recently developed theory in the field of algebraic topology to study shapes of datasets. It is an effective data analysis tool that is robust to noise and has been widely applied. We demonstrate a general…

Signal Processing · Electrical Eng. & Systems 2020-05-05 Yu-Min Chung , Chuan-Shen Hu , Yu-Lun Lo , Hau-Tieng Wu

Extracting useful information from large data sets can be a daunting task. Topological methods for analyzing data sets provide a powerful technique for extracting such information. Persistent homology is a sophisticated tool for identifying…

Quantum Physics · Physics 2015-12-17 Seth Lloyd , Silvano Garnerone , Paolo Zanardi

We introduce a consistent estimator for the homology (an algebraic structure representing connected components and cycles) of level sets of both density and regression functions. Our method is based on kernel estimation. We apply this…

Statistics Theory · Mathematics 2016-09-30 Omer Bobrowski , Sayan Mukherjee , Jonathan E. Taylor
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