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Neural encoding of artificial neural networks (ANNs) links their computational representations to brain responses, offering insights into how the brain processes information. Current studies mostly use linear encoding models for clarity,…

Neurons and Cognition · Quantitative Biology 2024-10-29 Xiaohui Gao , Yue Cheng , Peiyang Li , Yijie Niu , Yifan Ren , Yiheng Liu , Haiyang Sun , Zhuoyi Li , Weiwei Xing , Xintao Hu

Machine learning-based weather models have shown great promise in producing accurate forecasts but have struggled when applied to data assimilation tasks, unlike traditional numerical weather prediction (NWP) models. This study introduces…

Machine Learning · Computer Science 2024-12-03 Xiaoxu Tian

Alzheimer's disease (AD) leads to progressive cognitive decline, making early detection crucial for effective intervention. While deep learning models have shown high accuracy in AD diagnosis, their lack of interpretability limits clinical…

Computer Vision and Pattern Recognition · Computer Science 2025-06-17 Yasmine Mustafa , Mohamed Elmahallawy , Tie Luo

We study the use of feedforward neural networks (FNN) to develop models of nonlinear dynamical systems from data. Emphasis is placed on predictions at long times, with limited data availability. Inspired by global stability analysis, and…

Machine Learning · Statistics 2020-06-16 Shaowu Pan , Karthik Duraisamy

Deciphering brain function through non-invasive recordings requires synthesizing complementary high-frequency electromagnetic (EEG/MEG) and low-frequency metabolic (fMRI) signals. However, despite their shared neural origins, extreme…

Neurons and Cognition · Quantitative Biology 2026-02-26 Changli Tang , Shurui Li , Junliang Wang , Qinfan Xiao , Zhonghao Zhai , Lei Bai , Yu Qiao , Bowen Zhou , Wen Wu , Yuanning Li , Chao Zhang

Biological function arises through the dynamical interactions of multiple subsystems, including those between brain areas, within gene regulatory networks, and more. A common approach to understanding these systems is to model the dynamics…

Quantitative Methods · Quantitative Biology 2026-05-04 Adam J. Eisen , Mitchell Ostrow , Sarthak Chandra , Leo Kozachkov , Earl K. Miller , Ila R. Fiete

Understanding how the brain responds to sensory inputs is challenging: brain recordings are partial, noisy, and high dimensional; they vary across sessions and subjects and they capture highly nonlinear dynamics. These challenges have led…

Neurons and Cognition · Quantitative Biology 2022-10-03 Omar Chehab , Alexandre Defossez , Jean-Christophe Loiseau , Alexandre Gramfort , Jean-Remi King

Improving the interpretability of brain decoding approaches is of primary interest in many neuroimaging studies. Despite extensive studies of this type, at present, there is no formal definition for interpretability of brain decoding…

Machine Learning · Statistics 2016-06-21 Seyed Mostafa Kia , Andrea Passerini

Recently the deep learning techniques have achieved success in multi-label classification due to its automatic representation learning ability and the end-to-end learning framework. Existing deep neural networks in multi-label…

Machine Learning · Computer Science 2018-02-06 Huihui He , Rui Xia

Neural-network (NN) based decoders are becoming increasingly popular in the field of quantum error correction (QEC), including for decoding of state-of-the-art quantum computation experiments. In this work, we make use of established…

Quantum Physics · Physics 2025-07-16 Lukas Bödeker , Luc J. B. Kusters , Markus Müller

Dynamic brain data, teeming with biological and functional insights, are becoming increasingly accessible through advanced measurements, providing a gateway to understanding the inner workings of the brain in living subjects. However, the…

Neurons and Cognition · Quantitative Biology 2025-08-19 Zixia Zhou , Junyan Liu , Wei Emma Wu , Ruogu Fang , Sheng Liu , Qingyue Wei , Rui Yan , Yi Guo , Qian Tao , Yuanyuan Wang , Md Tauhidul Islam , Lei Xing

Interpretability of artificial intelligence (AI) methods, particularly deep neural networks, is of great interest. This heightened focus stems from the widespread use of AI-backed systems. These systems, often relying on intricate neural…

Quantum Physics · Physics 2024-11-11 Lirandë Pira , Chris Ferrie

Alterations in functional brain connectivity characterize neurodegenerative disorders such as Alzheimer's disease (AD) and frontotemporal dementia (FTD). As a non-invasive and cost-effective technique, electroencephalography (EEG) is…

Applications · Statistics 2025-11-19 Paolo Victor Redondo , Raphaël Huser , Hernando Ombao

Interpretable brain network models for disease prediction are of great value for the advancement of neuroscience. GNNs are promising to model complicated network data, but they are prone to overfitting and suffer from poor interpretability,…

Machine Learning · Computer Science 2021-07-13 Hejie Cui , Wei Dai , Yanqiao Zhu , Xiaoxiao Li , Lifang He , Carl Yang

Normative modelling is an emerging method for understanding the underlying heterogeneity within brain disorders like Alzheimer Disease (AD) by quantifying how each patient deviates from the expected normative pattern that has been learned…

Image and Video Processing · Electrical Eng. & Systems 2026-02-06 Sayantan Kumar , Philip Payne , Aristeidis Sotiras

Deep neural networks (DNNs) are known to be vulnerable to adversarial examples that are crafted with imperceptible perturbations, i.e., a small change in an input image can induce a mis-classification, and thus threatens the reliability of…

Machine Learning · Computer Science 2022-11-15 Deyin Liu , Lin Wu , Haifeng Zhao , Farid Boussaid , Mohammed Bennamoun , Xianghua Xie

Brain decoding is a popular multivariate approach for hypothesis testing in neuroimaging. It is well known that the brain maps derived from weights of linear classifiers are hard to interpret because of high correlations between predictors,…

Machine Learning · Statistics 2016-03-30 Seyed Mostafa Kia

Linear-nonlinear transforms are interesting in vision science because they are key in modeling a number of perceptual experiences such as color, motion or spatial texture. Here we first show that a number of issues in vision may be…

Neurons and Cognition · Quantitative Biology 2016-06-06 Borja Galan , Marina Martinez-Garcia , Praveen Cyriac , Thomas Batard , Marcelo Bertalmio , Jesus Malo

The evolution of deep learning and artificial intelligence has significantly reshaped technological landscapes. However, their effective application in crucial sectors such as medicine demands more than just superior performance, but…

Computer Vision and Pattern Recognition · Computer Science 2024-02-27 Yasmine Mustafa , Tie Luo

Deep learning methods based on Convolutional Neural Networks (CNNs) have shown great potential to improve early and accurate diagnosis of Alzheimer's disease (AD) dementia based on imaging data. However, these methods have yet to be widely…

Computer Vision and Pattern Recognition · Computer Science 2025-01-22 Wenjie Kang , Lize Jiskoot , Peter De Deyn , Geert Biessels , Huiberdina Koek , Jurgen Claassen , Huub Middelkoop , Wiesje Flier , Willemijn J. Jansen , Stefan Klein , Esther Bron
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