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Following the milestones in large language models (LLMs) and multimodal models, we have seen a surge in applying LLMs to biochemical tasks. Leveraging graph features and molecular text representations, LLMs can tackle various tasks, such as…

Machine Learning · Computer Science 2025-02-14 Chengxin Hu , Hao Li , Yihe Yuan , Jing Li , Ivor Tsang

Representation learning on graphs has been gaining attention due to its wide applicability in predicting missing links, and classifying and recommending nodes. Most embedding methods aim to preserve certain properties of the original graph…

Social and Information Networks · Computer Science 2019-09-13 Palash Goyal , Di Huang , Sujit Rokka Chhetri , Arquimedes Canedo , Jaya Shree , Evan Patterson

Fine-tuning for large language models (LLMs) typically requires substantial amounts of high-quality supervised data, which is both costly and labor-intensive to acquire. While synthetic data generation has emerged as a promising solution,…

Computation and Language · Computer Science 2025-05-28 Zihong Chen , Wanli Jiang , Jinzhe Li , Zhonghang Yuan , Huanjun Kong , Wanli Ouyang , Nanqing Dong

Graph Chain-of-Thought (Graph-CoT) enables large language models (LLMs) to perform step-by-step reasoning over graph-structured knowledge, but existing pipelines suffer from low accuracy, excessive token usage, high latency, and low…

The era of foundation models has revolutionized AI research, yet Graph Foundation Models (GFMs) remain constrained by the scarcity of large-scale graph corpora. Traditional graph data synthesis techniques primarily focus on simplistic…

Machine Learning · Computer Science 2025-05-06 Enjun Du , Xunkai Li , Tian Jin , Zhihan Zhang , Rong-Hua Li , Guoren Wang

Large Language Models (LLMs) exhibit strong reasoning capabilities on structured tasks, yet the internal mechanisms underlying such behaviors remain poorly understood. Existing interpretation methods mainly focus on token-level…

Computation and Language · Computer Science 2026-02-02 Xinnan Dai , Xianxuan Long , Chung-Hsiang Lo , Kai Guo , Shenglai Zeng , Dongsheng Luo , Jiliang Tang

Large Language Models (LLMs) have achieved impressive performance in text understanding and have become an essential tool for building smart assistants. Originally focusing on text, they have been enhanced with multimodal capabilities in…

Software Engineering · Computer Science 2024-10-24 Aaron Haag , Vlad Argatu , Oliver Lohse

Abstract meaning representation (AMR) highlights the core semantic information of text in a graph structure. Recently, pre-trained language models (PLMs) have advanced tasks of AMR parsing and AMR-to-text generation, respectively. However,…

Computation and Language · Computer Science 2022-05-05 Xuefeng Bai , Yulong Chen , Yue Zhang

Large language models (LLMs) excel at program synthesis, yet their ability to produce symbolic graphics programs (SGPs) that render into precise visual content remains underexplored. We study symbolic graphics programming, where the goal is…

Computer Vision and Pattern Recognition · Computer Science 2025-09-08 Yamei Chen , Haoquan Zhang , Yangyi Huang , Zeju Qiu , Kaipeng Zhang , Yandong Wen , Weiyang Liu

Recent advances in test-time scaling have enabled Large Language Models (LLMs) to display sophisticated reasoning abilities via extended Chain-of-Thought (CoT) generation. Despite their potential, these Reasoning LLMs (RLMs) often…

Computation and Language · Computer Science 2025-05-21 Zhen Xiong , Yujun Cai , Zhecheng Li , Yiwei Wang

Code generation aims to automatically generate source code from high-level task specifications, which can significantly increase productivity of software engineering. Recently, approaches based on large language models (LLMs) have shown…

Artificial Intelligence · Computer Science 2023-05-19 Xin-Ye Li , Jiang-Tian Xue , Zheng Xie , Ming Li

Large language models (LLMs) have shown great promise in generating structured diagrams from natural language descriptions, particularly Mermaid sequence diagrams for software engineering. However, the lack of existing benchmarks to assess…

Software Engineering · Computer Science 2026-04-28 Basel Shbita , Farhan Ahmed , Chad DeLuca

It is a key to construct a similarity graph in graph-oriented subspace learning and clustering. In a similarity graph, each vertex denotes a data point and the edge weight represents the similarity between two points. There are two popular…

Machine Learning · Computer Science 2017-05-17 Liangli Zhen , Zhang Yi , Xi Peng , Dezhong Peng

Despite significant advancements in Large Language Models (LLMs), developing advanced reasoning capabilities in LLMs remains a key challenge. Process Reward Models (PRMs) have demonstrated exceptional promise in enhancing reasoning by…

Computation and Language · Computer Science 2025-06-26 Miao Peng , Nuo Chen , Zongrui Suo , Jia Li

The fast advancement of Large Vision-Language Models (LVLMs) has shown immense potential. These models are increasingly capable of tackling abstract visual tasks. Geometric structures, particularly graphs with their inherent flexibility and…

Computer Vision and Pattern Recognition · Computer Science 2024-11-25 Camilo Chacón Sartori , Christian Blum , Filippo Bistaffa

The graph structure is a commonly used data storage mode, and it turns out that the low-dimensional embedded representation of nodes in the graph is extremely useful in various typical tasks, such as node classification, link prediction ,…

Social and Information Networks · Computer Science 2020-08-03 Xing Li , Wei Wei , Xiangnan Feng , Xue Liu , Zhiming Zheng

Graph mining is an important area in data mining and machine learning that involves extracting valuable information from graph-structured data. In recent years, significant progress has been made in this field through the development of…

Machine Learning · Computer Science 2024-12-30 Yuxin You , Zhen Liu , Xiangchao Wen , Yongtao Zhang , Wei Ai

Programming language understanding and representation (a.k.a code representation learning) has always been a hot and challenging task in software engineering. It aims to apply deep learning techniques to produce numerical representations of…

Software Engineering · Computer Science 2023-12-04 Weisong Sun , Chunrong Fang , Yun Miao , Yudu You , Mengzhe Yuan , Yuchen Chen , Quanjun Zhang , An Guo , Xiang Chen , Yang Liu , Zhenyu Chen

Random graph models are frequently used as a controllable and versatile data source for experimental campaigns in various research fields. Generating such data-sets at scale is a non-trivial task as it requires design decisions typically…

Data Structures and Algorithms · Computer Science 2020-03-03 Manuel Penschuck , Ulrik Brandes , Michael Hamann , Sebastian Lamm , Ulrich Meyer , Ilya Safro , Peter Sanders , Christian Schulz

Program source code contains complex structure information, which can be represented in structured data forms like trees or graphs. To acquire the structural information in source code, most existing researches use abstract syntax trees…

Software Engineering · Computer Science 2022-04-13 Kechi Zhang , Wenhan Wang , Huangzhao Zhang , Ge Li , Zhi Jin
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