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Abbreviations are unavoidable yet critical parts of the medical text. Using abbreviations, especially in clinical patient notes, can save time and space, protect sensitive information, and help avoid repetitions. However, most abbreviations…

Computation and Language · Computer Science 2022-10-07 Mucahit Cevik , Sanaz Mohammad Jafari , Mitchell Myers , Savas Yildirim

We investigate the effectiveness of fine-tuning large language models (LLMs) on small medical datasets for text classification and named entity recognition tasks. Using a German cardiology report dataset and the i2b2 Smoking Challenge…

Computation and Language · Computer Science 2025-03-28 Noah Losch , Lucas Plagwitz , Antonius Büscher , Julian Varghese

Clinical text provides essential information to estimate the acuity of a patient during hospital stays in addition to structured clinical data. In this study, we explore how clinical text can complement a clinical predictive learning task.…

The practice of evidence-based medicine (EBM) urges medical practitioners to utilise the latest research evidence when making clinical decisions. Because of the massive and growing volume of published research on various medical topics,…

Computation and Language · Computer Science 2017-06-27 Abeed Sarker , Diego Molla , Cecile Paris

Considering that words with different characteristic in the text have different importance for classification, grouping them together separately can strengthen the semantic expression of each part. Thus we propose a new text representation…

Computation and Language · Computer Science 2019-06-19 Xiaoye Tan , Rui Yan , Chongyang Tao , Mingrui Wu

This study investigates the use of unsupervised word embeddings and sequence features for sample representation in an active learning framework built to extract clinical concepts from clinical free text. The objective is to further reduce…

Computation and Language · Computer Science 2016-11-16 Mahnoosh Kholghi , Lance De Vine , Laurianne Sitbon , Guido Zuccon , Anthony Nguyen

The extraction and analysis of insights from medical data, primarily stored in free-text formats by healthcare workers, presents significant challenges due to its unstructured nature. Medical coding, a crucial process in healthcare, remains…

Computation and Language · Computer Science 2024-05-28 Mikhail Kulyabin , Gleb Sokolov , Aleksandr Galaida , Andreas Maier , Tomas Arias-Vergara

Recent advances in large language models enable documents to be represented as dense semantic embeddings, supporting similarity-based operations over large text collections. However, many web-scale systems still rely on flat clustering or…

Computation and Language · Computer Science 2026-01-30 Thomas Haschka , Joseph Bakarji

Large language models (LLMs) have achieved remarkable performance on diverse benchmarks, yet existing evaluation practices largely rely on coarse summary metrics that obscure underlying reasoning abilities. In this work, we propose novel…

Methodology · Statistics 2026-03-17 Jia Liu , Zhiyu Xu , Yuqi Gu

Text classification stands as a cornerstone within the realm of Natural Language Processing (NLP), particularly when viewed through computer science and engineering. The past decade has seen deep learning revolutionize text classification,…

Computation and Language · Computer Science 2025-04-23 Marco Siino , Ilenia Tinnirello , Marco La Cascia

Text classification is a fundamental problem in the field of natural language processing. Text classification mainly focuses on giving more importance to all the relevant features that help classify the textual data. Apart from these, the…

Computation and Language · Computer Science 2021-01-25 Suman Dowlagar , Radhika Mamidi

To assess the effectiveness of any medical intervention, researchers must conduct a time-intensive and highly manual literature review. NLP systems can help to automate or assist in parts of this expensive process. In support of this goal,…

Computation and Language · Computer Science 2021-11-24 Jay DeYoung , Iz Beltagy , Madeleine van Zuylen , Bailey Kuehl , Lucy Lu Wang

Patient experience and care quality are crucial for a hospital's sustainability and reputation. The analysis of patient feedback offers valuable insight into patient satisfaction and outcomes. However, the unstructured nature of these…

Computation and Language · Computer Science 2025-02-21 Hajar Sakai , Sarah S. Lam , Mohammadsadegh Mikaeili , Joshua Bosire , Franziska Jovin

Clinical coding is the task of assigning a set of alphanumeric codes, referred to as ICD (International Classification of Diseases), to a medical event based on the context captured in a clinical narrative. The latest version of ICD,…

Computation and Language · Computer Science 2022-03-11 Cansu Sen , Bingyang Ye , Javed Aslam , Amir Tahmasebi

Evidence-based medicine, the practice in which healthcare professionals refer to the best available evidence when making decisions, forms the foundation of modern healthcare. However, it relies on labour-intensive systematic reviews, where…

Computation and Language · Computer Science 2021-12-13 Jetsun Whitton , Anthony Hunter

Extreme multi-label (XML) classification refers to the task of supervised multi-label learning that involves a large number of labels. Hence, scalability of the classifier with increasing label dimension is an important consideration. In…

Machine Learning · Computer Science 2023-04-24 Istasis Mishra , Arpan Dasgupta , Pratik Jawanpuria , Bamdev Mishra , Pawan Kumar

Automated clinical text anonymization has the potential to unlock the widespread sharing of textual health data for secondary usage while assuring patient privacy and safety. Despite the proposal of many complex and theoretically successful…

Computation and Language · Computer Science 2024-06-05 David Pissarra , Isabel Curioso , João Alveira , Duarte Pereira , Bruno Ribeiro , Tomás Souper , Vasco Gomes , André V. Carreiro , Vitor Rolla

Screening patients for enrollment is a well-known, labor-intensive bottleneck that leads to under-enrollment and, ultimately, trial failures. Recent breakthroughs in large language models (LLMs) offer a promising opportunity to use…

Computation and Language · Computer Science 2026-04-30 Ziyi Chen , Mengxian Lyu , Cheng Peng , Yonghui Wu

Medical concept normalization helps in discovering standard concepts in free-form text i.e., maps health-related mentions to standard concepts in a vocabulary. It is much beyond simple string matching and requires a deep semantic…

Computation and Language · Computer Science 2020-06-09 Katikapalli Subramanyam Kalyan , S. Sangeetha

This work describes an automatic text classification method implemented in a software tool called NETHIC, which takes advantage of the inner capabilities of highly-scalable neural networks combined with the expressiveness of hierarchical…

Artificial Intelligence · Computer Science 2026-03-13 Luigi Lomasto , Rosario Di Florio , Andrea Ciapetti , Giuseppe Miscione , Giulia Ruggiero , Daniele Toti