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We combine standard persistent homology with image persistent homology to define a novel way of characterizing shapes and interactions between them. In particular, we introduce: (1) a mixup barcode, which captures geometric-topological…

Algebraic Topology · Mathematics 2026-05-19 Hubert Wagner , Nickolas Arustamyan , Matthew Wheeler , Peter Bubenik

Real data is often given as a point cloud, i.e. a finite set of points with pairwise distances between them. An important problem is to detect the topological shape of data --- for example, to approximate a point cloud by a low-dimensional…

Algebraic Topology · Mathematics 2018-10-09 Sara Kalisnik Verovsek , Vitaliy Kurlin , Davorin Lesnik

We apply persistent homology to the task of discovering and characterizing phase transitions, using lattice spin models from statistical physics for working examples. Persistence images provide a useful representation of the homological…

Statistical Mechanics · Physics 2020-12-03 Alex Cole , Gregory J. Loges , Gary Shiu

We introduce structural heterogeneity, a new topological characteristic for semi-ordered materials that captures their degree of organisation at a mesoscopic level and tracks their time-evolution, ultimately detecting the order-disorder…

In real-world systems, the relationships and connections between components are highly complex. Real systems are often described as networks, where nodes represent objects in the system and edges represent relationships or connections…

Algebraic Topology · Mathematics 2024-06-24 Shen Zhang

Detecting topological order in cold-atom experiments is an ongoing challenge, the resolution of which offers novel perspectives on topological matter. In material systems, unambiguous signatures of topological order exist for topological…

Quantum Gases · Physics 2013-04-25 N. Goldman , J. Dalibard , A. Dauphin , F. Gerbier , M. Lewenstein , P. Zoller , I. B. Spielman

Finding an optimal parameter of a black-box function is important for searching stable material structures and finding optimal neural network structures, and Bayesian optimization algorithms are widely used for the purpose. However, most of…

Machine Learning · Computer Science 2019-02-27 Tatsuya Shiraishi , Tam Le , Hisashi Kashima , Makoto Yamada

Persistent homology is a topological data analysis tool that has been widely generalized, extending its scope beyond the field of topology. Among its extensions, steady and ranging persistence were developed to study a wide variety of graph…

Algebraic Topology · Mathematics 2026-05-15 Yann-Situ Gazull

The formwork system belonging to the temporary structure plays an important role in the smooth progress and successful completion of a construction project. Ensuring that the formwork system is installed as designed is essential for…

Human-Computer Interaction · Computer Science 2024-04-23 Keyi Wu , Samuel A. Prieto , Eyob Mengiste , Borja García de Soto

Data quality is crucial for the successful training, generalization and performance of machine learning models. We propose to measure the quality of a subset concerning the dataset it represents, using topological data analysis techniques.…

Algebraic Topology · Mathematics 2024-10-01 Álvaro Torras-Casas , Eduardo Paluzo-Hidalgo , Rocio Gonzalez-Diaz

The persistent homology analysis is applied to the effective Polyakov-line model on a rectangular lattice to investigate the confinement-deconfinement nature. The lattice data are mapped onto the complex Polyakov-line plane without taking…

High Energy Physics - Lattice · Physics 2020-03-31 Takehiro Hirakida , Kouji Kashiwa , Junpei Sugano , Junichi Takahashi , Hiroaki Kouno , Masanobu Yahiro

We present a machine learning approach that leverages persistent homology to classify bacterial flagellar motors into two functional states: rotated and stalled. By embedding protein structural data into a topological framework, we extract…

Biomolecules · Quantitative Biology 2025-12-19 Zakaria Lamine , Abdelatif Hafid , Mohamed Rahouti

A key challenge for Industry 4.0 applications is to develop control systems for automated manufacturing services that are capable of addressing both data integration and semantic interoperability issues, as well as monitoring and decision…

Artificial Intelligence · Computer Science 2022-10-11 Massimo Carraturo , Andrea Mazzullo

We introduce "state space persistence analysis" for deducing the symbolic dynamics of time series data obtained from high-dimensional chaotic attractors. To this end, we adapt a topological data analysis technique known as persistent…

Chaotic Dynamics · Physics 2020-03-13 Gökhan Yalnız , Nazmi Burak Budanur

We use topological data analysis as a tool to analyze the fit of mathematical models to experimental data. This study is built on data obtained from motion tracking groups of aphids in [Nilsen et al., PLOS One, 2013] and two random walk…

Quantitative Methods · Quantitative Biology 2018-11-13 M. Ulmer , Lori Ziegelmeier , Chad M. Topaz

In this paper, we propose PATO-a producibility-aware topology optimization (TO) framework to help efficiently explore the design space of components fabricated using metal additive manufacturing (AM), while ensuring manufacturability with…

Computational Engineering, Finance, and Science · Computer Science 2021-12-10 Naresh S. Iyer , Amir M. Mirzendehdel , Sathyanarayanan Raghavan , Yang Jiao , Erva Ulu , Morad Behandish , Saigopal Nelaturi , Dean M. Robinson

Topological data analysis is a powerful tool for describing topological signatures in real world data. An important challenge in topological data analysis is matching significant topological signals across distinct systems. In geometry and…

Algebraic Topology · Mathematics 2025-02-19 Stephen Y Zhang , Michael P H Stumpf , Tom Needham , Agnese Barbensi

Biomolecular structure comparison not only reveals evolutionary relationships, but also sheds light on biological functional properties. However, traditional definitions of structure or sequence similarity always involve superposition or…

Quantitative Methods · Quantitative Biology 2017-07-13 Kelin Xia

Topological data analysis refers to approaches for systematically and reliably computing abstract ``shapes'' of complex data sets. There are various applications of topological data analysis in life and data sciences, with growing interest…

Mesoscale and Nanoscale Physics · Physics 2023-07-26 Daniel Leykam , Dimitris G. Angelakis

Topological invariants have proved useful for analyzing emergent function as they characterize a property of the entire system, and are insensitive to local details, disorder, and noise. They support boundary states, which reduce the system…

Statistical Mechanics · Physics 2025-10-10 Jaime Agudo-Canalejo , Evelyn Tang
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