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Motivation: The proliferation of Biomedical research articles has made the task of information retrieval more important than ever. Scientists and Researchers are having difficulty in finding articles that contain information relevant to…

Computation and Language · Computer Science 2020-11-04 Harsh Patel

The clinical named entity recognition (CNER) task seeks to locate and classify clinical terminologies into predefined categories, such as diagnostic procedure, disease disorder, severity, medication, medication dosage, and sign symptom.…

Computation and Language · Computer Science 2021-06-25 Yichao Zhou , Chelsea Ju , J. Harry Caufield , Kevin Shih , Calvin Chen , Yizhou Sun , Kai-Wei Chang , Peipei Ping , Wei Wang

Named Entity Disambiguation (NED) refers to the task of resolving multiple named entity mentions in a document to their correct references in a knowledge base (KB) (e.g., Wikipedia). In this paper, we propose a novel embedding method…

Computation and Language · Computer Science 2016-06-13 Ikuya Yamada , Hiroyuki Shindo , Hideaki Takeda , Yoshiyasu Takefuji

The escalating complexity of network threats and the inherent class imbalance in traffic data present formidable challenges for modern Intrusion Detection Systems (IDS). While Graph Neural Networks (GNNs) excel in modeling topological…

Machine Learning · Computer Science 2026-04-15 Tianxiang Xu , Zhichao Wen , Xinyu Zhao , Qi Hu , Yan Li , Chang Liu

In this paper, we propose a novel bipartite flat-graph network (BiFlaG) for nested named entity recognition (NER), which contains two subgraph modules: a flat NER module for outermost entities and a graph module for all the entities located…

Information Retrieval · Computer Science 2020-05-04 Ying Luo , Hai Zhao

Cross-domain NER is a practical yet challenging problem since the data scarcity in the real-world scenario. A common practice is first to learn a NER model in a rich-resource general domain and then adapt the model to specific domains. Due…

Computation and Language · Computer Science 2024-08-09 Junhao Zheng , Haibin Chen , Qianli Ma

Named entity recognition (NER) is usually developed and tested on text from well-written sources. However, in intelligent voice assistants, where NER is an important component, input to NER may be noisy because of user or speech recognition…

Most existing named entity recognition (NER) approaches are based on sequence labeling models, which focus on capturing the local context dependencies. However, the way of taking one sentence as input prevents the modeling of non-sequential…

Computation and Language · Computer Science 2021-06-03 Zanbo Wang , Wei Wei , Xianling Mao , Shanshan Feng , Pan Zhou , Zhiyong He , Sheng Jiang

Biomedical Named Entity Recognition (NER) is a fundamental task of Biomedical Natural Language Processing for extracting relevant information from biomedical texts, such as clinical records, scientific publications, and electronic health…

Computation and Language · Computer Science 2023-12-27 Fahime Shahrokh , Nasser Ghadiri , Rasoul Samani , Milad Moradi

Named entity discovery (NED) is an important information retrieval problem that can be decomposed into two sub-problems. The first sub-problem, named entity recognition (NER), aims to tag pre-defined sets of words in a vocabulary (called…

Information Retrieval · Computer Science 2018-11-27 Sammy Khalife , Michalis Vazirgiannis

Motivation: Named Entity Recognition (NER) is a key task to support biomedical research. In Biomedical Named Entity Recognition (BioNER), obtaining high-quality expert annotated data is laborious and expensive, leading to the development of…

Computation and Language · Computer Science 2023-05-23 Liangping Ding , Giovanni Colavizza , Zhixiong Zhang

Few-shot Named Entity Recognition (NER) aims to identify named entities with very little annotated data. Previous methods solve this problem based on token-wise classification, which ignores the information of entity boundaries, and…

Computation and Language · Computer Science 2022-11-22 Jianing Wang , Chengcheng Han , Chengyu Wang , Chuanqi Tan , Minghui Qiu , Songfang Huang , Jun Huang , Ming Gao

Few-shot named entity recognition (NER) systems recognize entities using a few labeled training examples. The general pipeline consists of a span detector to identify entity spans in text and an entity-type classifier to assign types to…

Computation and Language · Computer Science 2024-06-21 Chang Tian , Wenpeng Yin , Dan Li , Marie-Francine Moens

Recognition of biomedical entities from literature is a challenging research focus, which is the foundation for extracting a large amount of biomedical knowledge existing in unstructured texts into structured formats. Using the sequence…

Computation and Language · Computer Science 2021-05-18 Cong Sun , Zhihao Yang , Lei Wang , Yin Zhang , Hongfei Lin , Jian Wang

Joint extraction of entities and relations aims to detect entity pairs along with their relations using a single model. Prior work typically solves this task in the extract-then-classify or unified labeling manner. However, these methods…

Computation and Language · Computer Science 2020-02-20 Bowen Yu , Zhenyu Zhang , Xiaobo Shu , Yubin Wang , Tingwen Liu , Bin Wang , Sujian Li

Grounded Multimodal Named Entity Recognition (GMNER) is a nascent multimodal task that aims to identify named entities, entity types and their corresponding visual regions. GMNER task exhibits two challenging properties: 1) The weak…

Computer Vision and Pattern Recognition · Computer Science 2024-05-30 Jinyuan Li , Han Li , Di Sun , Jiahao Wang , Wenkun Zhang , Zan Wang , Gang Pan

Named entity recognition (NER) of chemicals and drugs is a critical domain of information extraction in biochemical research. NER provides support for text mining in biochemical reactions, including entity relation extraction, attribute…

Computation and Language · Computer Science 2020-12-22 Jian Liu , Lei Gao , Sujie Guo , Rui Ding , Xin Huang , Long Ye , Qinghua Meng , Asef Nazari , Dhananjay Thiruvady

Skip connection engineering is primarily employed to address the semantic gap between the encoder and decoder, while also integrating global dependencies to understand the relationships among complex anatomical structures in medical image…

Computer Vision and Pattern Recognition · Computer Science 2025-02-17 Ju-Hyeon Nam , Nur Suriza Syazwany , Sang-Chul Lee

Named entity recognition (NER), which focuses on the extraction of semantically meaningful named entities and their semantic classes from text, serves as an indispensable component for several down-stream natural language processing (NLP)…

Computation and Language · Computer Science 2018-10-23 Zhanming Jie , Aldrian Obaja Muis , Wei Lu

KnowNER is a multilingual Named Entity Recognition (NER) system that leverages different degrees of external knowledge. A novel modular framework divides the knowledge into four categories according to the depth of knowledge they convey.…

Computation and Language · Computer Science 2017-09-13 Dominic Seyler , Tatiana Dembelova , Luciano Del Corro , Johannes Hoffart , Gerhard Weikum