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Machine learning (ML) is increasingly becoming a common tool in computational chemistry. At the same time, the rapid development of ML methods requires a flexible software framework for designing custom workflows. MLatom 3 is a program…

Simulation plays a key role in scaling robot learning and validating policies, but constructing simulations remains a labor-intensive process. This paper introduces ReGen, a generative simulation framework that automates simulation design…

The electrical and electronic engineering has used parallel programming to solve its large scale complex problems for performance reasons. However, as parallel programming requires a non-trivial distribution of tasks and data, developers…

Distributed, Parallel, and Cluster Computing · Computer Science 2011-07-05 Antonio Wendell De Oliveira Rodrigues , Frédéric Guyomarc'H , Jean-Luc Dekeyser , Yvonnick Le Menach

Recent progress of deep generative models in the vision and language domain has stimulated significant interest in more structured data generation such as molecules. However, beyond generating new random molecules, efficient exploration and…

Machine Learning · Computer Science 2024-11-08 Guanghao Wei , Yining Huang , Chenru Duan , Yue Song , Yuanqi Du

The computational power increases over the past decades havegreatly enhanced the ability to simulate chemical reactions andunderstand ever more complex transformations. Tensor contractions are the fundamental computational building block of…

Mathematical Software · Computer Science 2022-01-02 Erdal Mutlu , Ruiqin Tian , Bin Ren , Sriram Krishnamoorthy , Roberto Gioiosa , Jacques Pienaar , Gokcen Kestor

An integrated computational framework is introduced to study complex engineering systems through physics-based ensemble simulations on heterogeneous supercomputers. The framework is primarily designed for the quantitative assessment of…

Computational Engineering, Finance, and Science · Computer Science 2022-02-08 Kazuki Maeda , Thiago Teixeira , Jonathan M. Wang , Jeffrey M. Hokanson , Caetano Melone , Mario Di Renzo , Steve Jones , Javier Urzay , Gianluca Iaccarino

Combinatorial testing is a widely adopted technique for efficiently detecting faults in software. The quality of combinatorial test generators plays a crucial role in achieving effective test coverage. Evaluating combinatorial test…

Software Engineering · Computer Science 2023-12-19 Andrea Bombarda , Angelo Gargantini

CG-Kit is a new code generation toolkit that we propose as a solution for portability and maintainability for scientific computing applications. The development of CG-Kit is rooted in the urgent need created by the shifting landscape of…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-01-09 Johann Rudi , Youngjun Lee , Aidan H. Chadha , Mohamed Wahib , Klaus Weide , Jared P. O'Neal , Anshu Dubey

Atomistic simulations are essential tools in chemistry and materials science, accelerating the discovery of novel catalysts, energy storage materials, and pharmaceuticals. However, running these simulations remains challenging due to the…

Chemical Physics · Physics 2025-06-11 Thang D. Pham , Aditya Tanikanti , Murat Keçeli

The proper choice of collective variables (CVs) is central to biased-sampling free energy reconstruction methods in molecular dynamics simulations. The PLUMED 2 library, for instance, provides several sophisticated CV choices, implemented…

Computational Physics · Physics 2018-02-28 Toni Giorgino

Computational load imbalance is a well-known performance issue in multiprocessor reacting flow simulations utilizing directly integrated chemical kinetics. We introduce an open-source dynamic load balancing model named DLBFoam to address…

Fluid Dynamics · Physics 2021-06-29 Bulut Tekgül , Petteri Peltonen , Heikki Kahila , Ossi Kaario , Ville Vuorinen

Synthetic polymeric materials underpin fundamental technologies in the energy, electronics, consumer goods, and medical sectors, yet their development still suffers from prolonged design timelines. Although polymer informatics tools have…

Computational Engineering, Finance, and Science · Computer Science 2025-06-12 Ayush Jain , Rampi Ramprasad

Astrochemical modeling is needed for understanding the formation and evolution of interstellar molecules, and for extracting physical information from spectroscopic observations of interstellar clouds. The modeling usually involves handling…

Solar and Stellar Astrophysics · Physics 2021-05-05 Fujun Du

The development of AI-assisted chemical synthesis tools requires comprehensive datasets covering diverse reaction types, yet current high-throughput experimental (HTE) approaches are expensive and limited in scope. Chemical literature…

Information Retrieval · Computer Science 2025-07-01 Kexin Chen , Yuyang Du , Junyou Li , Hanqun Cao , Menghao Guo , Xilin Dang , Lanqing Li , Jiezhong Qiu , Pheng Ann Heng , Guangyong Chen

For the calculation of complex neutral/ionized gas phase chemical equilibria, we present a semi-analytical versatile and efficient computer program, called FastChem. The applied method is based on the solution of a system of coupled…

Earth and Planetary Astrophysics · Physics 2018-06-27 J. W. Stock , D. Kitzmann , A. B. C. Patzer , E. Sedlmayr

In the era of data-driven science, conducting computational experiments that involve analysing large datasets using heterogeneous computational clusters, is part of the everyday routine for many scientists. Moreover, to ensure the…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-03-23 Thanasis Vergoulis , Konstantinos Zagganas , Loukas Kavouras , Martin Reczko , Stelios Sartzetakis , Theodore Dalamagas

Test-time scaling has emerged as a promising approach for improving code generation by exploring large solution spaces at inference time. However, existing methods often rely on public test cases that are unavailable in practice, or require…

Software Engineering · Computer Science 2026-05-21 Yifeng He , Ethan Wang , Jicheng Wang , Xuanxin Ouyang , Hao Chen

The cost of combustion simulations is often dominated by the evaluation of net production rates of chemical species and mixture thermodynamics (thermochemistry). Execution on computing accelerators (XPUs) like graphic processing units…

The rise of mixed reality systems such as Microsoft HoloLens has prompted an increase in interest in the fields of 2D and 3D holography. Already applied in fields including telecommunications, imaging, projection, lithography, beam shaping…

Image and Video Processing · Electrical Eng. & Systems 2021-09-28 Peter J. Christopher , Andrew Kadis , George S. D. Gordon , Timothy D. Wilkinson

Automatic generation of high-quality commit messages for code commits can substantially facilitate software developers' works and coordination. However, the semantic gap between source code and natural language poses a major challenge for…

Computation and Language · Computer Science 2021-06-22 Lun Yiu Nie , Cuiyun Gao , Zhicong Zhong , Wai Lam , Yang Liu , Zenglin Xu