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The application of deep learning to symbolic domains remains an active research endeavour. Graph neural networks (GNN), consisting of trained neural modules which can be arranged in different topologies at run time, are sound alternatives…

Social and Information Networks · Computer Science 2019-12-02 Pedro H. C. Avelar , Henrique Lemos , Marcelo O. R. Prates , Luis Lamb

Predicting disease states from functional brain connectivity is critical for the early diagnosis of severe neurodegenerative diseases such as Alzheimer's Disease and Parkinson's Disease. Existing studies commonly employ Graph Neural…

Machine Learning · Computer Science 2025-04-22 David Yang , Mostafa Abdelmegeed , John Modl , Minjeong Kim

In this paper, we propose a context-aware recommender system that models students' programming skills using embeddings of the source code they submit throughout a course. These embeddings predict students' skills across multiple programming…

Machine Learning · Computer Science 2026-02-12 Carlos Eduardo P. Silva , João Pedro M. Sena , Julio C. S. Reis , André G. Santos , Lucas N. Ferreira

Understanding disease similarity is critical for advancing diagnostics, drug discovery, and personalized treatment strategies. We present PhenoGnet, a novel graph-based contrastive learning framework designed to predict disease similarity…

Genomics · Quantitative Biology 2025-09-18 Ranga Baminiwatte , Kazi Jewel Rana , Aaron J. Masino

Functional connectivity (FC) as derived from fMRI has emerged as a pivotal tool in elucidating the intricacies of various psychiatric disorders and delineating the neural pathways that underpin cognitive and behavioral dynamics inherent to…

Neurons and Cognition · Quantitative Biology 2024-01-22 Gang Qu , Anton Orlichenko , Junqi Wang , Gemeng Zhang , Li Xiao , Aiying Zhang , Zhengming Ding , Yu-Ping Wang

Lots of neural network architectures have been proposed to deal with learning tasks on graph-structured data. However, most of these models concentrate on only node features during the learning process. The edge features, which usually play…

Machine Learning · Computer Science 2021-01-20 Jun Chen , Haopeng Chen

Recent advancements in graph neural networks (GNNs) and heterogeneous GNNs (HGNNs) have advanced node embeddings and relationship learning for various tasks. However, existing methods often rely on domain-specific predefined meta-paths,…

Machine Learning · Computer Science 2025-08-28 Jongwoo Kim , Seongyeub Chu , Hyeongmin Park , Bryan Wong , Keejun Han , Mun Yong Yi

The rapid evolution of malware has necessitated the development of sophisticated detection methods that go beyond traditional signature-based approaches. Graph learning techniques have emerged as powerful tools for modeling and analyzing…

Cryptography and Security · Computer Science 2025-07-23 Hossein Shokouhinejad , Roozbeh Razavi-Far , Hesamodin Mohammadian , Mahdi Rabbani , Samuel Ansong , Griffin Higgins , Ali A Ghorbani

Subgraph pattern detection aims to uncover complex interaction structures in graphs. However, state-of-the-art graph neural network (GNN)-based solutions assume centralized access to the entire graph. When graphs are instead distributed…

Machine Learning · Computer Science 2026-05-08 Selin Ceydeli , Rui Wang , Kubilay Atasu

Recent works on representation learning for graph structured data predominantly focus on learning distributed representations of graph substructures such as nodes and subgraphs. However, many graph analytics tasks such as graph…

Artificial Intelligence · Computer Science 2017-07-18 Annamalai Narayanan , Mahinthan Chandramohan , Rajasekar Venkatesan , Lihui Chen , Yang Liu , Shantanu Jaiswal

Learning continuous representations of nodes is attracting growing interest in both academia and industry recently, due to their simplicity and effectiveness in a variety of applications. Most of existing node embedding algorithms and…

Machine Learning · Computer Science 2019-03-05 Zhaocheng Zhu , Shizhen Xu , Meng Qu , Jian Tang

Deep multi-task learning attracts much attention in recent years as it achieves good performance in many applications. Feature learning is important to deep multi-task learning for sharing common information among tasks. In this paper, we…

Machine Learning · Computer Science 2020-02-13 Pengxin Guo , Chang Deng , Linjie Xu , Xiaonan Huang , Yu Zhang

Tackling binary program analysis problems has traditionally implied manually defining rules and heuristics, a tedious and time-consuming task for human analysts. In order to improve automation and scalability, we propose an alternative…

Cryptography and Security · Computer Science 2021-05-25 Shushan Arakelyan , Sima Arasteh , Christophe Hauser , Erik Kline , Aram Galstyan

Graph-structured data is ubiquitous in the real world, and Graph Neural Networks (GNNs) have become increasingly popular in various fields due to their ability to process such irregular data directly. However, as data scale, GNNs become…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-02-10 Xianfeng Song , Yi Zou , Zheng Shi

Graph neural networks (GNNs) are typically applied to static graphs that are assumed to be known upfront. This static input structure is often informed purely by insight of the machine learning practitioner, and might not be optimal for the…

Entity alignment is a viable means for integrating heterogeneous knowledge among different knowledge graphs (KGs). Recent developments in the field often take an embedding-based approach to model the structural information of KGs so that…

Computation and Language · Computer Science 2019-09-23 Yuting Wu , Xiao Liu , Yansong Feng , Zheng Wang , Dongyan Zhao

The problem of code generation from textual program descriptions has long been viewed as a grand challenge in software engineering. In recent years, many deep learning based approaches have been proposed, which can generate a sequence of…

Software Engineering · Computer Science 2021-04-23 Chen Lyu , Ruyun Wang , Hongyu Zhang , Hanwen Zhang , Songlin Hu

Graphs, such as social networks, word co-occurrence networks, and communication networks, occur naturally in various real-world applications. Analyzing them yields insight into the structure of society, language, and different patterns of…

Social and Information Networks · Computer Science 2019-08-22 Palash Goyal , Emilio Ferrara

Graph representation learning is a fast-growing field where one of the main objectives is to generate meaningful representations of graphs in lower-dimensional spaces. The learned embeddings have been successfully applied to perform various…

Machine Learning · Computer Science 2021-12-21 Md. Khaledur Rahman , Ariful Azad

With the rising interest in graph representation learning, a variety of approaches have been proposed to effectively capture a graph's properties. While these approaches have improved performance in graph machine learning tasks compared to…

Machine Learning · Computer Science 2019-10-09 Antonia Gogoglou , C. Bayan Bruss , Keegan E. Hines