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Interpretability is a key issue when applying deep learning models to longitudinal brain MRIs. One way to address this issue is by visualizing the high-dimensional latent spaces generated by deep learning via self-organizing maps (SOM). SOM…

Computer Vision and Pattern Recognition · Computer Science 2023-10-03 Jiahong Ouyang , Qingyu Zhao , Ehsan Adeli , Wei Peng , Greg Zaharchuk , Kilian M. Pohl

Quantitative T1rho mapping has shown promise in clinical and research studies. However, it suffers from long scan times. Deep learning-based techniques have been successfully applied in accelerated quantitative MR parameter mapping.…

Image and Video Processing · Electrical Eng. & Systems 2024-07-25 Yuanyuan Liu , Jinwen Xie , Zhuo-Xu Cui , Qingyong Zhu , Jing Cheng , Dong Liang , Yanjie Zhu

An implicit neural representation (INR) is a neural network that approximates a spatiotemporal function. Many memory-intensive visualization tasks, including modern 4D CT scanning methods, represent data natively as INRs. While INRs are…

Machine Learning · Computer Science 2025-12-03 Jennifer Zvonek , Andrew Gillette

Brain age estimation from Magnetic Resonance Images (MRI) derives the difference between a subject's biological brain age and their chronological age. This is a potential biomarker for neurodegeneration, e.g. as part of Alzheimer's disease.…

Computer Vision and Pattern Recognition · Computer Science 2020-10-02 Kyriaki-Margarita Bintsi , Vasileios Baltatzis , Arinbjörn Kolbeinsson , Alexander Hammers , Daniel Rueckert

Implicit Neural Representations (INRs) have emerged as a paradigm in knowledge representation, offering exceptional flexibility and performance across a diverse range of applications. INRs leverage multilayer perceptrons (MLPs) to model…

Computer Vision and Pattern Recognition · Computer Science 2025-02-19 Amer Essakine , Yanqi Cheng , Chun-Wun Cheng , Lipei Zhang , Zhongying Deng , Lei Zhu , Carola-Bibiane Schönlieb , Angelica I Aviles-Rivero

Implicit Neural Representations (INRs) provide a powerful continuous framework for modeling complex visual and geometric signals, but spectral bias remains a fundamental challenge, limiting their ability to capture high-frequency details.…

Machine Learning · Computer Science 2025-12-01 Yesom Park , Kelvin Kan , Thomas Flynn , Yi Huang , Shinjae Yoo , Stanley Osher , Xihaier Luo

Reconstructing high-fidelity magnetic resonance (MR) images from under-sampled k-space is a commonly used strategy to reduce scan time. The posterior sampling of diffusion models based on the real measurement data holds significant promise…

Image and Video Processing · Electrical Eng. & Systems 2024-07-04 Jiayue Chu , Chenhe Du , Xiyue Lin , Yuyao Zhang , Hongjiang Wei

Neuroanatomical segmentation in magnetic resonance imaging (MRI) of the brain is a prerequisite for volume, thickness and shape measurements. This work introduces a new highly accurate and versatile method based on 3D convolutional neural…

Quantitative Methods · Quantitative Biology 2019-02-07 Philip Novosad , Vladimir Fonov , D. Louis Collins

Implicit Neural Representations (INRs) are widely used to encode data as continuous functions, enabling the visualization of large-scale multivariate scientific simulation data with reduced memory usage. However, existing INR-based methods…

Computer Vision and Pattern Recognition · Computer Science 2026-03-04 Hyunsoo Son , Jeonghyun Noh , Suemin Jeon , Chaoli Wang , Won-Ki Jeong

Segmenting a structural magnetic resonance imaging (MRI) scan is an important pre-processing step for analytic procedures and subsequent inferences about longitudinal tissue changes. Manual segmentation defines the current gold standard in…

Computer Vision and Pattern Recognition · Computer Science 2017-06-07 Alex Fedorov , Jeremy Johnson , Eswar Damaraju , Alexei Ozerin , Vince Calhoun , Sergey Plis

Magnetic resonance imaging (MRI) is a crucial medical imaging modality. However, long acquisition times remain a significant challenge, leading to increased costs, and reduced patient comfort. Recent studies have shown the potential of…

Computer Vision and Pattern Recognition · Computer Science 2025-07-30 Amirmohammad Shamaei , Alexander Stebner , Salome , Bosshart , Johanna Ospel , Gouri Ginde , Mariana Bento , Roberto Souza

We adapt structural complexity analysis to three-dimensional signals, with an emphasis on brain magnetic resonance imaging (MRI). This framework captures the multiscale organization of volumetric data by coarse-graining the signal at…

Computer Vision and Pattern Recognition · Computer Science 2026-01-27 Anzhe Cheng , Italo Ivo Lima Dias Pinto , Paul Bogdan

High-resolution magnetic resonance imaging (MRI) is essential in clinical diagnosis. However, its long acquisition time remains a critical issue. Parallel imaging (PI) is a common approach to reduce acquisition time by periodically skipping…

Image and Video Processing · Electrical Eng. & Systems 2025-06-10 Hao Li , Yusheng Zhou , Jianan Liu , Xiling Liu , Tao Huang , Zhihan Lyu , Weidong Cai , Wei Chen

Magnetic Resonance Imaging (MRI) provides detailed structural information, while functional MRI (fMRI) captures temporal brain activity. In this work, we present a multimodal deep learning framework that integrates MRI and fMRI for…

Computer Vision and Pattern Recognition · Computer Science 2026-03-17 Anima Kujur , Zahra Monfared

Accelerating Magnetic Resonance Imaging (MRI) reduces scan time but often degrades image quality. While Implicit Neural Representations (INRs) show promise for MRI reconstruction, they struggle at high acceleration factors due to weak prior…

Computer Vision and Pattern Recognition · Computer Science 2025-08-12 Ziad Al-Haj Hemidi , Eytan Kats , Mattias P. Heinrich

High-resolution whole-brain in vivo MR imaging at mesoscale resolutions remains challenging due to long scan durations, motion artifacts, and limited signal-to-noise ratio (SNR). This study proposes Rotating-view super-resolution…

Image and Video Processing · Electrical Eng. & Systems 2025-05-26 Jun Lyu , Lipeng Ning , William Consagra , Qiang Liu , Richard J. Rushmore , Berkin Bilgic , Yogesh Rathi

Machine learning analysis of neuroimaging data can accurately predict chronological age in healthy people and deviations from healthy brain ageing have been associated with cognitive impairment and disease. Here we sought to further…

The reconstruction of 3D cine-MRI is challenged by highly undersampled k-space data in each cine frame, due to the slow speed of MR signal acquisition. We proposed a machine learning-based framework, spatial and temporal implicit neural…

Medical Physics · Physics 2023-08-22 Hua-Chieh Shao , Tielige Mengke , Jie Deng , You Zhang

Dynamic MRI suffers from limited spatiotemporal resolution due to long acquisition times. Undersampling k-space accelerates imaging but makes accurate reconstruction challenging. Supervised deep learning methods achieve impressive results…

Image and Video Processing · Electrical Eng. & Systems 2025-11-18 Yuanyuan Liu , Yuanbiao Yang , Jing Cheng , Zhuo-Xu Cui , Qingyong Zhu , Congcong Liu , Yuliang Zhu , Jingran Xu , Hairong Zheng , Dong Liang , Yanjie Zhu