Related papers: Quantum Algorithms for the Minimum Steiner Tree pr…
Described are two algorithms to find long approximate palindromes in a string, for example a DNA sequence. A simple algorithm requires O(n)-space and almost always runs in $O(k.n)$-time where n is the length of the string and k is the…
Binary quadratic programming problems have attracted much attention in the last few decades due to their potential applications. This type of problems are NP-hard in general, and still considered a challenge in the design of efficient…
It has recently been shown that starting with a classical query algorithm (decision tree) and a guessing algorithm that tries to predict the query answers, we can design a quantum algorithm with query complexity $O(\sqrt{GT})$ where $T$ is…
Protein folding processes are a vital aspect of molecular biology that is hard to simulate with conventional computers. Quantum algorithms have been proven superior for certain problems and may help tackle this complex life science…
Quantum algorithms for several problems in graph theory are considered. Classical algorithms for finding the lowest weight path between two points in a graph and for finding a minimal weight spanning tree involve searching over some space.…
Computing bounded depth decompositions is a bottleneck in many applications of the treedepth parameter. The fastest known algorithm, which is due to Reidl, Rossmanith, S\'{a}nchez Villaamil, and Sikdar [ICALP 2014], runs in…
In this paper we study quantum algorithms for NP-complete problems whose best classical algorithm is an exponential time application of dynamic programming. We introduce the path in the hypercube problem that models many of these dynamic…
Matrix multiplication is a fundamental classical computing operation whose efficiency becomes a major challenge at scale, especially for machine learning applications. Quantum computing, with its inherent parallelism and exponential storage…
In this paper, we consider the ``Shortest Superstring Problem''(SSP) or the ``Shortest Common Superstring Problem''(SCS). The problem is as follows. For a positive integer $n$, a sequence of n strings $S=(s^1,\dots,s^n)$ is given. We should…
We study the classic Euclidean Minimum Spanning Tree (MST) problem in the Massively Parallel Computation (MPC) model. Given a set $X \subset \mathbb{R}^d$ of $n$ points, the goal is to produce a spanning tree for $X$ with weight within a…
Longest common substring (LCS), longest palindrome substring (LPS), and Ulam distance (UL) are three fundamental string problems that can be classically solved in near linear time. In this work, we present sublinear time quantum algorithms…
This paper addresses biquadratic polynomial programming (BPP), an NP-hard optimization problem closely related to biquadratic tensors. We first establish several necessary and sufficient conditions for the positive semi-definiteness and…
The Dollo model for reconstructing evolutionary trees from binary characters has been proposed as a generalization of the infinite sites model, also known as the Perfect Phylogeny. In particular, the Dollo model is considered more realistic…
A fundamental problem in computer science is to find all the common zeroes of $m$ quadratic polynomials in $n$ unknowns over $\mathbb{F}_2$. The cryptanalysis of several modern ciphers reduces to this problem. Up to now, the best complexity…
In this paper we propose and study a new complexity model for approximation algorithms. The main motivation are practical problems over large data sets that need to be solved many times for different scenarios, e.g., many multicast trees…
In binary jumbled pattern matching we wish to preprocess a binary string $S$ in order to answer queries $(i,j)$ which ask for a substring of $S$ that is of size $i$ and has exactly $j$ 1-bits. The problem naturally generalizes to…
We show that protein sequences can be thought of as sentences in natural language processing and can be parsed using the existing Quantum Natural Language framework into parameterized quantum circuits of reasonable qubits, which can be…
In the Euclidean Bottleneck Steiner Tree problem, the input consists of a set of $n$ points in $\mathbb{R}^2$ called terminals and a parameter $k$, and the goal is to compute a Steiner tree that spans all the terminals and contains at most…
We settle the complexities of the maximum-cardinality bipartite matching problem (BMM) up to poly-logarithmic factors in five models of computation: the two-party communication, AND query, OR query, XOR query, and quantum edge query models.…
We introduce a novel quantum algorithm for the lattice Boltzmann method (LBM) based on the one-step simplified LBM. The structure of the algorithm allows for more flexibility in modelling different physics in contrast to earlier quantum…