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For a metric graph $G=(V,E)$ and $R\subset V$, the internal Steiner minimum tree problem asks for a minimum weight Steiner tree spanning $R$ such that every vertex in $R$ is not a leaf. This note shows a simple polynomial-time…

Data Structures and Algorithms · Computer Science 2013-07-18 Bang Ye Wu

We propose two quantum algorithms for a problem in bioinformatics, position weight matrix (PWM) matching, which aims to find segments (sequence motifs) in a biological sequence such as DNA and protein that have high scores defined by the…

Quantum Physics · Physics 2023-03-08 Koichi Miyamoto , Naoki Yamamoto , Yasubumi Sakakibara

The Bayesian network structure learning (BNSL) problem asks for a directed acyclic graph that maximizes a given score function. For networks with $n$ nodes, the fastest known algorithms run in time $O(2^n n^2)$ in the worst case, with no…

Data Structures and Algorithms · Computer Science 2025-06-03 Juha Harviainen , Kseniya Rychkova , Mikko Koivisto

We consider a quantum polynomial-time algorithm which solves the discrete logarithm problem for points on elliptic curves over $GF(2^m)$. We improve over earlier algorithms by constructing an efficient circuit for multiplying elements of…

Quantum Physics · Physics 2009-12-18 Donny Cheung , Dmitri Maslov , Jimson Mathew , Dhiraj K. Pradhan

Solving systems of m multivariate quadratic equations in n variables (MQ-problem) over finite fields is NP-hard. The security of many cryptographic systems is based on this problem. Up to now, the best algorithm for solving the underdefined…

Cryptography and Security · Computer Science 2015-07-15 Heliang Huang , Wansu Bao

In the k-Connected Directed Steiner Tree problem (k-DST), we are given a directed graph G=(V, E) with edge (or vertex) costs, a root vertex r, a set of q terminals T, and a connectivity requirement k>0; the goal is to find a minimum-cost…

Data Structures and Algorithms · Computer Science 2019-11-22 Chun-Hsiang Chan , Bundit Laekhanukit , Hao-Ting Wei , Yuhao Zhang

Parameterized complexity enables the practical solution of generally intractable NP-hard problems when certain parameters are small, making it particularly useful in real-world applications. The study of string problems in this framework…

Quantum Physics · Physics 2025-10-20 Josh Cudby , Sergii Strelchuk

In the Priority Steiner Tree (PST) problem, we are given an undirected graph $G=(V,E)$ with a source $s \in V$ and terminals $T \subseteq V \setminus \{s\}$, where each terminal $v \in T$ requires a nonnegative priority $P(v)$. The goal is…

Data Structures and Algorithms · Computer Science 2021-09-01 Faryad Darabi Sahneh , Stephen Kobourov , Richard Spence

We study quantum algorithms for several fundamental string problems, including Longest Common Substring, Lexicographically Minimal String Rotation, and Longest Square Substring. These problems have been widely studied in the stringology…

Data Structures and Algorithms · Computer Science 2021-10-22 Shyan Akmal , Ce Jin

We give an algorithm that computes a $(1+\epsilon)$-approximate Steiner forest in near-linear time $n \cdot 2^{(1/\epsilon)^{O(ddim^2)} (\log \log n)^2}$. This is a dramatic improvement upon the best previous result due to Chan et al., who…

Computational Geometry · Computer Science 2019-04-09 Lee-Ad Gottlieb , Yair Bartal

Topological quantum computing is an alternative framework for avoiding the quantum decoherence problem in quantum computation. The problem of executing a gate in this framework can be posed as the problem of braiding quasiparticles. Because…

Quantum Physics · Physics 2014-12-10 Roberto Santana , Ross B. McDonald , Helmut G. Katzgraber

Given the success of deep learning in classical machine learning, quantum algorithms for traditional neural network architectures may provide one of the most promising settings for quantum machine learning. Considering a fully-connected…

Quantum Physics · Physics 2021-07-21 Alexander Zlokapa , Hartmut Neven , Seth Lloyd

In this paper, an exact algorithm in polynomial time is developed to solve unrestricted binary quadratic programs. The computational complexity is $O\left( n^{\frac{15}{2}}\right) $, although very conservative, it is sufficient to prove…

Data Structures and Algorithms · Computer Science 2021-02-02 Juan Ignacio Mulero-Martínez

The emergence of huge-scale, data-intensive linear optimization (LO) problems in applications such as machine learning has driven the need for more computationally efficient interior point methods (IPMs). While conventional IPMs are…

We present a novel self-stabilizing algorithm for minimum spanning tree (MST) construction. The space complexity of our solution is $O(\log^2n)$ bits and it converges in $O(n^2)$ rounds. Thus, this algorithm improves the convergence time of…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-11-05 Lélia Blin , Shlomi Dolev , Maria Gradinariu Potop-Butucaru , Stephane Rovedakis

We give a quantum algorithm for the binary NAND tree problem in the Hamiltonian oracle model. The algorithm uses a continuous time quantum walk with a run time proportional to sqrt N. We also show a lower bound of sqrt N for the NAND tree…

Quantum Physics · Physics 2007-05-23 E. Farhi , J. Goldstone , S. Gutmann

We present a randomized quantum algorithm for polynomial factorization over finite fields. For polynomials of degree $n$ over a finite field $\F_q$, the average-case complexity of our algorithm is an expected $O(n^{1 + o(1)} \log^{2 +…

Symbolic Computation · Computer Science 2018-12-14 Javad Doliskani

Finding a minimum spanning tree (MST) for $n$ points in an arbitrary metric space is a fundamental primitive for hierarchical clustering and many other ML tasks, but this takes $\Omega(n^2)$ time to even approximate. We introduce a…

Data Structures and Algorithms · Computer Science 2025-02-19 Nate Veldt , Thomas Stanley , Benjamin W. Priest , Trevor Steil , Keita Iwabuchi , T. S. Jayram , Geoffrey Sanders

We present a quantum eigenstate filtering algorithm based on quantum signal processing (QSP) and minimax polynomials. The algorithm allows us to efficiently prepare a target eigenstate of a given Hamiltonian, if we have access to an initial…

Quantum Physics · Physics 2020-11-12 Lin Lin , Yu Tong

Given a metric space on n points, an {\alpha}-approximate universal algorithm for the Steiner tree problem outputs a distribution over rooted spanning trees such that for any subset X of vertices containing the root, the expected cost of…

Data Structures and Algorithms · Computer Science 2010-11-18 Anand Bhalgat , Deeparnab Chakrabarty , Sanjeev Khanna