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Numerical investigations are an important research tool in quantum information theory. There already exists a wide range of computational tools for quantum information theory implemented in various programming languages. However, there is…

Quantum Physics · Physics 2019-01-01 Piotr Gawron , Dariusz Kurzyk , Łukasz Pawela

Program synthesis is the process of automatically translating a specification into computer code. Traditional synthesis settings require a formal, precise specification. Motivated by computer education applications where a student learns to…

Artificial Intelligence · Computer Science 2018-06-05 Evan Hernandez , Ara Vartanian , Xiaojin Zhu

We present QuantumToolbox$.$jl, an open-source Julia package for simulating open quantum systems. Designed with a syntax familiar to users of QuTiP (Quantum Toolbox in Python), it harnesses Julia's high-performance ecosystem to deliver fast…

Quantum Physics · Physics 2025-10-06 Alberto Mercurio , Yi-Te Huang , Li-Xun Cai , Yueh-Nan Chen , Vincenzo Savona , Franco Nori

We present MultiObjectiveAlgorithms.jl, an open-source Julia library for solving multi-objective optimization problems written in JuMP. MultiObjectiveAlgorithms.jl implements a number of different solution algorithms, which all rely on an…

Optimization and Control · Mathematics 2026-05-26 Oscar Dowson , Xavier Gandibleux , Gökhan Kof

We introduce program splicing, a programming methodology that aims to automate the commonly used workflow of copying, pasting, and modifying code available online. Here, the programmer starts by writing a "draft" that mixes unfinished code,…

Programming Languages · Computer Science 2017-05-26 Yanxin Lu , Swarat Chaudhuri , Chris Jermaine , David Melski

Bridging cultures that have often been distant, Julia combines expertise from the diverse fields of computer science and computational science to create a new approach to numerical computing. Julia is designed to be easy and fast. Julia…

Mathematical Software · Computer Science 2015-07-21 Jeff Bezanson , Alan Edelman , Stefan Karpinski , Viral B. Shah

We present StochasticPrograms.jl, a user-friendly and powerful open-source framework for stochastic programming written in the Julia language. The framework includes both modeling tools and structure-exploiting optimization algorithms.…

Optimization and Control · Mathematics 2022-09-07 Martin Biel , Mikael Johansson

Biclustering is a data mining technique which searches for local patterns in numeric tabular data with main application in bioinformatics. This technique has shown promise in multiple areas, including development of biomarkers for cancer,…

Machine Learning · Computer Science 2021-05-05 Paweł Renc , Patryk Orzechowski , Aleksander Byrski , Jarosław Wąs , Jason H. Moore

Agent based modelling is a simulation method in which autonomous agents interact with their environment and one another, given a predefined set of rules. It is an integral method for modelling and simulating complex systems, such as…

Multiagent Systems · Computer Science 2022-01-10 George Datseris , Ali R. Vahdati , Timothy C. DuBois

Increasing emphasis on data and quantitative methods in the biomedical sciences is making biological research more computational. Collecting, curating, processing, and analysing large genomic and imaging data sets poses major computational…

Quantitative Methods · Quantitative Biology 2021-09-22 Elisabeth Roesch , Joe G. Greener , Adam L. MacLean , Huda Nassar , Christopher Rackauckas , Timothy E. Holy , Michael P. H. Stumpf

Synthesis is the automatic construction of a system from its specification. In classical synthesis algorithms it is always assumed that the system is "constructed from scratch" rather than composed from reusable components. This, of course,…

Logic in Computer Science · Computer Science 2011-11-10 Yoad Lustig , Moshe Vardi

Motivation: Estimating model parameters from experimental observations is one of the key challenges in systems biology and can be computationally very expensive. While the Julia programming language was recently developed as a high-level…

Quantitative Methods · Quantitative Biology 2020-11-06 Paul F. Lang , Sungho Shin , Victor M. Zavala

The Julia programming language has evolved into a modern alternative to fill existing gaps in scientific computing and data science applications. Julia leverages a unified and coordinated single-language and ecosystem paradigm and has a…

High-level synthesis (HLS) is a process that automatically translates a software program in a high-level language into a low-level hardware description. However, the hardware designs produced by HLS tools still suffer from a significant…

Programming Languages · Computer Science 2023-08-16 Jianyi Cheng , Samuel Coward , Lorenzo Chelini , Rafael Barbalho , Theo Drane

In the task of automatic program synthesis, one obtains pairs of matching inputs and outputs and generates a computer program, in a particular domain-specific language (DSL), which given each sample input returns the matching output. A key…

Machine Learning · Computer Science 2023-03-14 Aran Carmon , Lior Wolf

Scientific legacy code in MATLAB/Octave not compatible with modernization of research workflows is vastly abundant throughout academic community. Performance of non-vectorized code written in MATLAB/Octave represents a major burden. A new…

Software Engineering · Computer Science 2017-01-10 Vardan Andriasyan , Yauhen Yakimovich , Artur Yakimovich

We present DataDeps.jl: a julia package for the reproducible handling of static datasets to enhance the repeatability of scripts used in the data and computational sciences. It is used to automate the data setup part of running software…

Software Engineering · Computer Science 2018-08-06 Lyndon White , Roberto Togneri , Wei Liu , Mohammed Bennamoun

Approximating partial differential equations for extensive industrial and scientific applications requires leveraging the power of modern high-performance computing. In large-scale parallel computations, the geometrical discretisation…

Numerical Analysis · Mathematics 2024-12-30 Pere A. Martorell , Santiago Badia

Program synthesis techniques offer significant new capabilities in searching for programs that satisfy high-level specifications. While synthesis has been thoroughly explored for input/output pair specifications (programming-by-example),…

Human-Computer Interaction · Computer Science 2019-09-27 Will Crichton

Program similarity has become an increasingly popular area of research with various security applications such as plagiarism detection, author identification, and malware analysis. However, program similarity research faces a few unique…

Cryptography and Security · Computer Science 2024-05-07 Alexander Interrante-Grant , Michael Wang , Lisa Baer , Ryan Whelan , Tim Leek