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Computational engineering generates knowledge through the analysis and interpretation of research data, which is produced by computer simulation. Supercomputers produce huge amounts of research data. To address a research question, a lot of…

Information Retrieval · Computer Science 2020-07-15 Björn Schembera , Dorothea Iglezakis

It is challenging to determine whether datasets are findable, accessible, interoperable, and reusable (FAIR) because the FAIR Guiding Principles refer to highly idiosyncratic criteria regarding the metadata used to annotate datasets.…

Digital Libraries · Computer Science 2022-10-17 Mark A. Musen , Martin J. O'Connor , Erik Schultes , Marcos Martinez-Romero , Josef Hardi , John Graybeal

The generation of large, high-quality datasets for code understanding and generation remains a significant challenge, particularly when aligning decompiled binaries with their original source code. To address this, we present CodableLLM, a…

Software Engineering · Computer Science 2025-07-31 Dylan Manuel , Paul Rad

Advances in logic programming and increasing industrial uptake of Datalog-inspired approaches demonstrate the emerging need to express powerful code analyses more easily. Declarative program analysis frameworks (e.g., using logic…

Software Engineering · Computer Science 2021-12-24 Rijnard van Tonder

The reuse of research software is central to research efficiency and academic exchange. The application of software enables researchers with varied backgrounds to reproduce, validate, and expand upon study findings. Furthermore, the…

Metadata play a crucial role in adopting the FAIR principles for research software and enables findability and reusability. However, creating high-quality metadata can be resource-intensive for researchers and research software engineers.…

Software Engineering · Computer Science 2025-12-17 Stephan Ferenz , Aida Jafarbigloo , Oliver Werth , Astrid Nieße

With the global increase in experimental data artifacts, harnessing them in a unified fashion leads to a major stumbling block - bad metadata. To bridge this gap, this work presents a Natural Language Processing (NLP) informed application,…

Computation and Language · Computer Science 2024-05-02 Sowmya S. Sundaram , Mark A. Musen

Software Documentation plays a major role in the usage and development of a project. Widespread adoption of open source software projects contributes to larger and faster development of the projects, making it difficult to maintain the…

Software Engineering · Computer Science 2025-08-26 Akhila Sri Manasa Venigalla , Sridhar Chimalakonda

Benchmark datasets have a significant impact on accelerating research in programming language tasks. In this paper, we introduce CodeXGLUE, a benchmark dataset to foster machine learning research for program understanding and generation.…

Research methods and procedures are core aspects of the research process. Metadata focused on these components is critical to supporting the FAIR principles, particularly reproducibility. The research reported on in this paper presents a…

The task of generating code solutions for a given programming problem can benefit from the use of pre-trained language models such as Codex, which can produce multiple diverse samples. However, a major challenge for this task is to select…

Computation and Language · Computer Science 2022-11-24 Bei Chen , Fengji Zhang , Anh Nguyen , Daoguang Zan , Zeqi Lin , Jian-Guang Lou , Weizhu Chen

Code generation models can benefit data scientists' productivity by automatically generating code from context and text descriptions. An important measure of the modeling progress is whether a model can generate code that can correctly…

Software Engineering · Computer Science 2022-11-18 Junjie Huang , Chenglong Wang , Jipeng Zhang , Cong Yan , Haotian Cui , Jeevana Priya Inala , Colin Clement , Nan Duan , Jianfeng Gao

Large language models (LLMs) have shown impressive promise in code generation, yet their progress remains limited by the shortage of large-scale datasets that are both diverse and well-aligned with human reasoning. Most existing resources…

Machine Learning · Computer Science 2025-10-28 Amal Abed , Ivan Lukic , Jörg K. H. Franke , Frank Hutter

Modern workflows run on increasingly heterogeneous computing architectures and with this heterogeneity comes additional complexity. We aim to apply the FAIR principles for research reproducibility by developing software to collect metadata…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-06-19 Polina Shpilker , Line Pouchard

Code large language models (Code LLMs) have made significant progress in code generation by translating natural language descriptions into functional code; however, real-world applications often demand stricter adherence to detailed…

Computation and Language · Computer Science 2025-08-04 Jian Yang , Wei Zhang , Shukai Liu , Linzheng Chai , Yingshui Tan , Jiaheng Liu , Ge Zhang , Wangchunshu Zhou , Guanglin Niu , Zhoujun Li , Binyuan Hui , Junyang Lin

To adequately test modern code generation systems, evaluation benchmarks must execute and test the code generated by the system. However, these execution and testing requirements have largely limited benchmarks to settings where code is…

Software Engineering · Computer Science 2024-10-04 Yiqing Xie , Alex Xie , Divyanshu Sheth , Pengfei Liu , Daniel Fried , Carolyn Rose

Developing models that can automatically generate detailed code explanation can greatly benefit software maintenance and programming education. However, existing code-to-text generation models often produce only high-level summaries of code…

Computation and Language · Computer Science 2022-11-29 Haotian Cui , Chenglong Wang , Junjie Huang , Jeevana Priya Inala , Todd Mytkowicz , Bo Wang , Jianfeng Gao , Nan Duan

Publicly available source-code libraries are continuously growing and changing. This makes it impossible for models of code to keep current with all available APIs by simply training these models on existing code repositories. Thus,…

Computation and Language · Computer Science 2023-02-21 Shuyan Zhou , Uri Alon , Frank F. Xu , Zhiruo Wang , Zhengbao Jiang , Graham Neubig

The increasing complexity and volume of data generated by high-throughput computational materials science require robust tools to ensure their accessibility, reproducibility, and reuse. In particular, integrating the FAIR Guiding Principles…

Materials Science · Physics 2025-10-28 Lucrezia Berghenti , Elisa Damiani , Margherita Marsili , Maria Clelia Righi
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