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We introduce an explainability method for biomedical hypothesis generation systems, built on top of the novel Hypothesis Generation Context Retriever framework. Our approach combines semantic graph-based retrieval and relevant…

Information Retrieval · Computer Science 2025-11-11 Ilya Tyagin , Saeideh Valipour , Aliaksandra Sikirzhytskaya , Michael Shtutman , Ilya Safro

Knowledge graph is a popular format for representing knowledge, with many applications to semantic search engines, question-answering systems, and recommender systems. Real-world knowledge graphs are usually incomplete, so knowledge graph…

Machine Learning · Computer Science 2023-04-26 Hung Nghiep Tran , Atsuhiro Takasu

We design a new technique for the distributional semantic modeling with a neural network-based approach to learn distributed term representations (or term embeddings) - term vector space models as a result, inspired by the recent…

Computation and Language · Computer Science 2022-01-04 Oleksandr Palagin , Vitalii Velychko , Kyrylo Malakhov , Oleksandr Shchurov

As large language models (LLMs) continue to grow in size, their abilities to tackle complex tasks have significantly improved. However, issues such as hallucination and the lack of up-to-date knowledge largely remain unresolved. Knowledge…

Artificial Intelligence · Computer Science 2026-03-17 Lihui Liu

Vector-space models, from word embeddings to neural network parsers, have many advantages for NLP. But how to generalise from fixed-length word vectors to a vector space for arbitrary linguistic structures is still unclear. In this paper we…

Computation and Language · Computer Science 2017-10-03 Diana Nicoleta Popa , James Henderson

The proliferation of complex, multimodal datasets has exposed a critical gap between the capabilities of specialized vector databases and traditional graph databases. While vector databases excel at semantic similarity search, they lack the…

Databases · Computer Science 2025-10-14 Joydeep Chandra , Satyam Kumar Navneet , Yong Zhang

Large Language Models (LLMs) have achieved impressive progress in natural language processing, but their limited ability to retain long-term context constrains performance on document-level or multi-turn tasks. Retrieval-Augmented…

Computation and Language · Computer Science 2025-05-20 Zhangyu Wang , Siyuan Gao , Rong Zhou , Hao Wang , Li Ning

Knowledge graph embeddings are now a widely adopted approach to knowledge representation in which entities and relationships are embedded in vector spaces. In this chapter, we introduce the reader to the concept of knowledge graph…

Artificial Intelligence · Computer Science 2020-05-01 Federico Bianchi , Gaetano Rossiello , Luca Costabello , Matteo Palmonari , Pasquale Minervini

With the prolification of multimodal interaction in various domains, recently there has been much interest in text based image retrieval in the computer vision community. However most of the state of the art techniques model this problem in…

Artificial Intelligence · Computer Science 2019-11-05 Sahana Ramnath , Amrita Saha , Soumen Chakrabarti , Mitesh M. Khapra

Large Language Models have rapidly advanced in their ability to interpret and generate natural language. In enterprise settings, they are frequently augmented with closed-source domain knowledge to deliver more contextually informed…

Computation and Language · Computer Science 2025-12-03 Tanmay Agrawal

Recent advances in Large Language Models (LLMs) have shown promise in function-level code generation, yet repository-level software engineering tasks remain challenging. Current solutions predominantly rely on proprietary LLM agents, which…

Representing relations between concepts is a core prerequisite for intelligent systems to make sense of the world. Recent work using causal mediation analysis has shown that a small set of attention heads encodes task representation in…

Computation and Language · Computer Science 2026-01-14 Andrea Kang , Yingnian Wu , Hongjing Lu

The growing demand for automated graph algorithm reasoning has attracted increasing attention in the large language model (LLM) community. Recent LLM-based graph reasoning methods typically decouple task descriptions from graph data,…

Software Engineering · Computer Science 2026-03-10 Fali Wang , Chenglin Weng , Xianren Zhang , Siyuan Hong , Hui Liu , Suhang Wang

Vector representations of graphs and relational structures, whether hand-crafted feature vectors or learned representations, enable us to apply standard data analysis and machine learning techniques to the structures. A wide range of…

Machine Learning · Computer Science 2020-03-31 Martin Grohe

Repository-level code generation aims to generate code within the context of a specified repository. Existing approaches typically employ retrieval-augmented generation (RAG) techniques to provide LLMs with relevant contextual information…

Software Engineering · Computer Science 2025-11-04 Yang Liu , Li Zhang , Fang Liu , Zhuohang Wang , Donglin Wei , Zhishuo Yang , Kechi Zhang , Jia Li , Lin Shi

Long-horizon applications increasingly require large language models (LLMs) to answer queries when relevant evidence is sparse and dispersed across very long contexts. Existing memory systems largely follow two paradigms: explicit…

Computation and Language · Computer Science 2026-01-08 Xin Zhang , Kailai Yang , Hao Li , Chenyue Li , Qiyu Wei , Sophia Ananiadou

Word embedding, which refers to low-dimensional dense vector representations of natural words, has demonstrated its power in many natural language processing tasks. However, it may suffer from the inaccurate and incomplete information…

Computation and Language · Computer Science 2015-06-16 Fei Tian , Bin Gao , Enhong Chen , Tie-Yan Liu

Extraction and interpretation of intricate information from unstructured text data arising in financial applications, such as earnings call transcripts, present substantial challenges to large language models (LLMs) even using the current…

Computation and Language · Computer Science 2024-08-12 Bhaskarjit Sarmah , Benika Hall , Rohan Rao , Sunil Patel , Stefano Pasquali , Dhagash Mehta

Repository summarization is a crucial research question in development and maintenance for software engineering. Existing repository summarization techniques primarily focus on summarizing code according to the directory tree, which is…

Software Engineering · Computer Science 2025-10-14 Yifeng Zhu , Xianlin Zhao , Xutian Li , Yanzhen Zou , Haizhuo Yuan , Yue Wang , Bing Xie

In visual tasks, large teacher models capture essential features and deep information, enhancing performance. However, distilling this information into smaller student models often leads to performance loss due to structural differences and…

Computer Vision and Pattern Recognition · Computer Science 2024-05-17 Zhiwei Wang , Jun Huang , Longhua Ma , Chengyu Wu , Hongyu Ma