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The interaction between charged bodies in an ionic solution is a general problem in colloid physics and becomes a central topic in the study of biological systems where the electrostatic interaction between proteins, nucleic acids,…
The work explores a specific scenario for structural computational optimization based on the following elements: (a) a relaxed optimization setting considering the ersatz (bi-material) approximation, (b) a treatment based on a nonsmoothed…
We present an analysis of the stability, energy and torque properties of a model Bursian diode in a one dimensional Eulerian framework using the cold Euler-Poisson fluid equations. In regions of parameter space where there are two sets of…
A widely used electrostatics model in the biomolecular modeling community, the nonlinear Poisson-Boltzmann equation, along with its finite element approximation, are analyzed in this paper. A regularized Poisson-Boltzmann equation is…
We consider a planar two-dimensional system between two media with different dielectric constants and in the presence of a third dielectric medium separated by a nonplanar interface. Extending a perturbative method for solving Poisson's…
Using the Poisson bracket method, we derive continuum equations for a fluid of deformable particles in two dimensions. Particle shape is quantified in terms of two continuum fields: an anisotropy density field that captures the deformations…
The Poisson-Boltzmann equation is a nonlinear elliptic equation with Dirac distribution sources, which has been widely applied to the prediction of electrostatics potential of biological biomolecular systems in solution. In this paper, we…
We consider Lagrangians in Hamilton's principle defined on the tangent space $TG$ of a Lie group $G$. Invariance of such a Lagrangian under the action of $G$ leads to the symmetry-reduced Euler-Lagrange equations called the Euler-Poincar\'e…
We provide a closed Poisson algebra involving the Ragnisco--Bruschi generalization of peakon dynamics in the Camassa--Holm shallow-water equation. This algebra is generated by three independent matrices. From this presentation, we propose a…
Enhanced sampling and free energy calculation algorithms of the Thermodynamic Integration family (such as the Adaptive Biasing Force method, ABF) are not based on the direct computation of a free energy surface, but rather of its gradient.…
We present a simple variational framework for planar elastica that enables distributed energies, such as gravitational loading or magnetic body torques, to be incorporated in a modular and unified manner. The formulation is based on…
Potential flow has many applications, including the modelling of unsteady flows in aerodynamics. For these models to work efficiently, it is best to avoid Biot-Savart interactions. This work presents a grid-based treatment of potential…
The Poisson-Boltzmann (PB) equation provides a mean-field theory of electrolyte solutions at interfaces and in confinement, describing how ions reorganize close to charged surfaces to form the so-called electrical double layer (EDL), with…
We present a nonvariational setting for the Neumann problem for the Poisson equation for solutions that are H\"{o}lder continuous and that may have infinite Dirichlet integral. We introduce a distributional normal derivative on the boundary…
Long range frequency chirping of Bernstein-Greene-Kruskal modes, whose existence is determined by the fast particles, is investigated in cases where these particles do not move freely and their motion is bounded to restricted orbits. An…
We construct a hierarchy of integrable systems whose Poisson structure corresponds to the BMS$_{3}$ algebra, and then discuss its description in terms of the Riemannian geometry of locally flat spacetimes in three dimensions. The analysis…
We introduce a new class of Poisson-exponential-Tweedie (PET) mixture in the framework of generalized linear models for ultra-overdispersed count data. The mean-variance relationship is of the form $m+m^{2}+\phi m^{p}$, where $\phi$ and $p$…
We present a new technique to apply finite element methods to partial differential equations over curved domains. A change of variables along a coordinate transformation satisfying only low regularity assumptions can translate a Poisson…
We examine dust acoustic (DA) solitary structures in an unmagnetized, collisionless dusty electron positron ion (epi) plasma in which electrons and positrons are described by finite temperature Fermi Dirac statistics and ions obey a…
By identifying a norm capturing the effect of the forcing governed by the Poisson equation, we give a detailed spectrum analysis on the linearized Vlasov-Poisson-Boltzmann system around a global Maxwellian. It is shown that the electric…